miRNA display CGI


Results 61 - 80 of 877 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6368 3' -59.3 NC_001847.1 + 106290 0.75 0.290252
Target:  5'- -cCGCCGGCGUCGcGCGcGCgGCCGCGc -3'
miRNA:   3'- gaGCGGUUGCAGC-UGU-CGgCGGCGCc -5'
6368 3' -59.3 NC_001847.1 + 46194 0.75 0.290252
Target:  5'- -gCGgUAGCGgccggCGGCGGCCGCCGcCGGg -3'
miRNA:   3'- gaGCgGUUGCa----GCUGUCGGCGGC-GCC- -5'
6368 3' -59.3 NC_001847.1 + 133209 0.75 0.290252
Target:  5'- -gCGCCGGCGgccCGAgUGGCCGCCGCGc -3'
miRNA:   3'- gaGCGGUUGCa--GCU-GUCGGCGGCGCc -5'
6368 3' -59.3 NC_001847.1 + 100667 0.75 0.292892
Target:  5'- cCUCGCCGcCGUccgcauccucgccgcCGGCGGCCaCCGCGGc -3'
miRNA:   3'- -GAGCGGUuGCA---------------GCUGUCGGcGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 30056 0.75 0.296887
Target:  5'- -cCGCCGACGgCGGCuuCCGCCGCGu -3'
miRNA:   3'- gaGCGGUUGCaGCUGucGGCGGCGCc -5'
6368 3' -59.3 NC_001847.1 + 27104 0.75 0.296887
Target:  5'- uUUGCCGcgcGCGcccCGcCGGCCGCCGCGGc -3'
miRNA:   3'- gAGCGGU---UGCa--GCuGUCGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 34105 0.75 0.296887
Target:  5'- gCUCGCgCGGCGgcggagccugCGGCgccugccgcgguGGCCGCCGCGGc -3'
miRNA:   3'- -GAGCG-GUUGCa---------GCUG------------UCGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 116784 0.75 0.296887
Target:  5'- -gCGCCGACGaaugaaCGGCuGCCGCCGaCGGu -3'
miRNA:   3'- gaGCGGUUGCa-----GCUGuCGGCGGC-GCC- -5'
6368 3' -59.3 NC_001847.1 + 132869 0.75 0.296887
Target:  5'- -cCGCCGACGgCGGCuuCCGCCGCGu -3'
miRNA:   3'- gaGCGGUUGCaGCUGucGGCGGCGCc -5'
6368 3' -59.3 NC_001847.1 + 129917 0.75 0.296887
Target:  5'- uUUGCCGcgcGCGcccCGcCGGCCGCCGCGGc -3'
miRNA:   3'- gAGCGGU---UGCa--GCuGUCGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 52007 0.75 0.296887
Target:  5'- -gCGcCCGACGccgCGGCGGCCGCCGaGGa -3'
miRNA:   3'- gaGC-GGUUGCa--GCUGUCGGCGGCgCC- -5'
6368 3' -59.3 NC_001847.1 + 113136 0.75 0.302959
Target:  5'- gUCGCCGGCGUCGuaguuuuCAGCgggucguCGaCCGCGGg -3'
miRNA:   3'- gAGCGGUUGCAGCu------GUCG-------GC-GGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 41319 0.75 0.302959
Target:  5'- gCUCGCgcggcgcaaagucCAGCGggGACucGGCCGCCGCGGc -3'
miRNA:   3'- -GAGCG-------------GUUGCagCUG--UCGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 103688 0.75 0.303639
Target:  5'- -aCGCgCGGCGgCGGCccgcgccggGGCCGCCGCGGc -3'
miRNA:   3'- gaGCG-GUUGCaGCUG---------UCGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 875 0.75 0.303639
Target:  5'- -aCGCgCGGCGgCGGCccgcgccggGGCCGCCGCGGc -3'
miRNA:   3'- gaGCG-GUUGCaGCUG---------UCGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 47437 0.75 0.303639
Target:  5'- gUCGUCGGCuUCG-CcGCCGCCGCGGc -3'
miRNA:   3'- gAGCGGUUGcAGCuGuCGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 104714 0.75 0.303639
Target:  5'- -gCGCCGcgagcGCGUgCGAgAGcCCGCCGCGGc -3'
miRNA:   3'- gaGCGGU-----UGCA-GCUgUC-GGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 80631 0.75 0.303639
Target:  5'- gUUGCCGAUGgCGACGGCggCGCuCGCGGg -3'
miRNA:   3'- gAGCGGUUGCaGCUGUCG--GCG-GCGCC- -5'
6368 3' -59.3 NC_001847.1 + 1901 0.75 0.303639
Target:  5'- -gCGCCGcgagcGCGUgCGAgAGcCCGCCGCGGc -3'
miRNA:   3'- gaGCGGU-----UGCA-GCUgUC-GGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 82874 0.75 0.303639
Target:  5'- gCUCGCCcguGCGggcgCGccGCAGCCaaGCCGCGGc -3'
miRNA:   3'- -GAGCGGu--UGCa---GC--UGUCGG--CGGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.