miRNA display CGI


Results 81 - 100 of 877 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6368 3' -59.3 NC_001847.1 + 32281 0.75 0.310509
Target:  5'- -gCGCCGuccGCGUggcgcggccccgCGAC-GCCGCCGCGGa -3'
miRNA:   3'- gaGCGGU---UGCA------------GCUGuCGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 32759 0.75 0.310509
Target:  5'- uUCGCgGGCGgcgcuucgCGACGGCCGgCCGCuGGa -3'
miRNA:   3'- gAGCGgUUGCa-------GCUGUCGGC-GGCG-CC- -5'
6368 3' -59.3 NC_001847.1 + 101880 0.75 0.310509
Target:  5'- gCUCGCCuuugcgcGCGgaccgCGGCAGCggaggCGCCGCGGc -3'
miRNA:   3'- -GAGCGGu------UGCa----GCUGUCG-----GCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 2935 0.75 0.311203
Target:  5'- -cCGCCAGCGcggccgccuccagcgCGGCGGCCGCCuCGGc -3'
miRNA:   3'- gaGCGGUUGCa--------------GCUGUCGGCGGcGCC- -5'
6368 3' -59.3 NC_001847.1 + 42642 0.75 0.316792
Target:  5'- -gCGCCGACGUCGuGCccuuugucgaagaGGCCGCCGCc- -3'
miRNA:   3'- gaGCGGUUGCAGC-UG-------------UCGGCGGCGcc -5'
6368 3' -59.3 NC_001847.1 + 34382 0.75 0.317497
Target:  5'- -cCGaaaCAACGgCGGCcGCCGCCGCGGc -3'
miRNA:   3'- gaGCg--GUUGCaGCUGuCGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 30800 0.75 0.317497
Target:  5'- -aCGCCGccGCGUCu---GCCGCCGCGGc -3'
miRNA:   3'- gaGCGGU--UGCAGcuguCGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 16153 0.75 0.317497
Target:  5'- -gCGCCAGCauGUCG-CAcGCCGCCGCGc -3'
miRNA:   3'- gaGCGGUUG--CAGCuGU-CGGCGGCGCc -5'
6368 3' -59.3 NC_001847.1 + 116346 0.74 0.324602
Target:  5'- -gCGCUGGCG-CGcGCcGCCGCCGCGGa -3'
miRNA:   3'- gaGCGGUUGCaGC-UGuCGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 32224 0.74 0.329645
Target:  5'- -aCGCCGuccaggcgcacgcgGCGUCGAUAGCCGCUGaCGc -3'
miRNA:   3'- gaGCGGU--------------UGCAGCUGUCGGCGGC-GCc -5'
6368 3' -59.3 NC_001847.1 + 130605 0.74 0.331824
Target:  5'- -gCGCCAcccGCG--GGCGGCCGCCGCGa -3'
miRNA:   3'- gaGCGGU---UGCagCUGUCGGCGGCGCc -5'
6368 3' -59.3 NC_001847.1 + 33549 0.74 0.331824
Target:  5'- -gCGCCGAagaGgCGGCAGaCGCCGCGGa -3'
miRNA:   3'- gaGCGGUUg--CaGCUGUCgGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 48402 0.74 0.331824
Target:  5'- -aCGCCAGCG-CGACAcaucGCCcuCCGCGGg -3'
miRNA:   3'- gaGCGGUUGCaGCUGU----CGGc-GGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 32376 0.74 0.331824
Target:  5'- -gCGCCGGCGUCG-CGGgCGUCGCGc -3'
miRNA:   3'- gaGCGGUUGCAGCuGUCgGCGGCGCc -5'
6368 3' -59.3 NC_001847.1 + 11561 0.74 0.331824
Target:  5'- -gCGcCCAGCGgguGCGGCUGCCGCGGu -3'
miRNA:   3'- gaGC-GGUUGCagcUGUCGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 68424 0.74 0.338425
Target:  5'- gUCGCCAaccggcACGUCGaaGCGGCCGCagagguccgcgccCGCGGc -3'
miRNA:   3'- gAGCGGU------UGCAGC--UGUCGGCG-------------GCGCC- -5'
6368 3' -59.3 NC_001847.1 + 99753 0.74 0.339164
Target:  5'- uUgGCCGGCccggcaGugAGCCGCCGCGGc -3'
miRNA:   3'- gAgCGGUUGcag---CugUCGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 93765 0.74 0.339164
Target:  5'- -cUGCCGGCGgCGGCccGGCCGCCGCu- -3'
miRNA:   3'- gaGCGGUUGCaGCUG--UCGGCGGCGcc -5'
6368 3' -59.3 NC_001847.1 + 61830 0.74 0.346622
Target:  5'- gUCGUCGGCGUcCGACucGCCGUCGcCGGc -3'
miRNA:   3'- gAGCGGUUGCA-GCUGu-CGGCGGC-GCC- -5'
6368 3' -59.3 NC_001847.1 + 3210 0.74 0.346622
Target:  5'- -cCGCCAGC-UCGcGCAGCCGCuCGCGc -3'
miRNA:   3'- gaGCGGUUGcAGC-UGUCGGCG-GCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.