miRNA display CGI


Results 101 - 120 of 877 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6368 3' -59.3 NC_001847.1 + 3210 0.74 0.346622
Target:  5'- -cCGCCAGC-UCGcGCAGCCGCuCGCGc -3'
miRNA:   3'- gaGCGGUUGcAGC-UGUCGGCG-GCGCc -5'
6368 3' -59.3 NC_001847.1 + 106023 0.74 0.346622
Target:  5'- -cCGCCAGC-UCGcGCAGCCGCuCGCGc -3'
miRNA:   3'- gaGCGGUUGcAGC-UGUCGGCG-GCGCc -5'
6368 3' -59.3 NC_001847.1 + 61830 0.74 0.346622
Target:  5'- gUCGUCGGCGUcCGACucGCCGUCGcCGGc -3'
miRNA:   3'- gAGCGGUUGCA-GCUGu-CGGCGGC-GCC- -5'
6368 3' -59.3 NC_001847.1 + 33756 0.74 0.346622
Target:  5'- aUUGCCGGCGgcgccgCgGGCAGCCcCCGCGGc -3'
miRNA:   3'- gAGCGGUUGCa-----G-CUGUCGGcGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 103708 0.74 0.354196
Target:  5'- aUCaCCAGCGccagCGACGuCCGCCGCGGc -3'
miRNA:   3'- gAGcGGUUGCa---GCUGUcGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 99624 0.74 0.354196
Target:  5'- cCUCGCCGaggauGCGcUCGGC-GCgCGCCGUGGc -3'
miRNA:   3'- -GAGCGGU-----UGC-AGCUGuCG-GCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 81022 0.74 0.354196
Target:  5'- --aGCgCAugGgCGAC-GCCGCCGCGGa -3'
miRNA:   3'- gagCG-GUugCaGCUGuCGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 101003 0.74 0.354196
Target:  5'- -cCGCC-GCGgCGGCAguuacugccGCCGCCGCGGc -3'
miRNA:   3'- gaGCGGuUGCaGCUGU---------CGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 97066 0.74 0.354196
Target:  5'- uUCcCCGAcCG-CGGCGGCCGCCGCGc -3'
miRNA:   3'- gAGcGGUU-GCaGCUGUCGGCGGCGCc -5'
6368 3' -59.3 NC_001847.1 + 74145 0.74 0.354196
Target:  5'- -gCGCCGAUGgcggccUCGACGG-CGCCGUGGg -3'
miRNA:   3'- gaGCGGUUGC------AGCUGUCgGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 32130 0.74 0.354196
Target:  5'- -cCGCCGGCGcUgGGC-GCCGCCGCGc -3'
miRNA:   3'- gaGCGGUUGC-AgCUGuCGGCGGCGCc -5'
6368 3' -59.3 NC_001847.1 + 97712 0.74 0.357258
Target:  5'- gCUCGCCGuCGUCGGCgggggcagaagcggaAGCgGCgGCGGc -3'
miRNA:   3'- -GAGCGGUuGCAGCUG---------------UCGgCGgCGCC- -5'
6368 3' -59.3 NC_001847.1 + 52637 0.74 0.361886
Target:  5'- aUCGCC-ACGUugcCGAUGGCCGCCcgcacggccGCGGg -3'
miRNA:   3'- gAGCGGuUGCA---GCUGUCGGCGG---------CGCC- -5'
6368 3' -59.3 NC_001847.1 + 107975 0.74 0.361886
Target:  5'- -cCGCCGACauuauUgGGCuGGCCGCCGCGGc -3'
miRNA:   3'- gaGCGGUUGc----AgCUG-UCGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 3350 0.74 0.361886
Target:  5'- -aUGCCGACGcUGcCGGCCGCCGCa- -3'
miRNA:   3'- gaGCGGUUGCaGCuGUCGGCGGCGcc -5'
6368 3' -59.3 NC_001847.1 + 8627 0.74 0.361886
Target:  5'- -cCGCCGGgGga-GCGGCCGCUGCGGa -3'
miRNA:   3'- gaGCGGUUgCagcUGUCGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 84179 0.73 0.368905
Target:  5'- -cCGCCGacuggGCGUCGugcgccaGCAGCCGCUGCuGGu -3'
miRNA:   3'- gaGCGGU-----UGCAGC-------UGUCGGCGGCG-CC- -5'
6368 3' -59.3 NC_001847.1 + 54100 0.73 0.369691
Target:  5'- -aCGCCcACGUCGcccccGCAGuCCGCgGCGGc -3'
miRNA:   3'- gaGCGGuUGCAGC-----UGUC-GGCGgCGCC- -5'
6368 3' -59.3 NC_001847.1 + 36351 0.73 0.369691
Target:  5'- -gCGCCGcggcgcgcgcACG-CGGC-GCCGCCGCGGc -3'
miRNA:   3'- gaGCGGU----------UGCaGCUGuCGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 31865 0.73 0.369691
Target:  5'- gCUCGCCGGCGUugcugcCGGCGGagcCCGUCGCGcGg -3'
miRNA:   3'- -GAGCGGUUGCA------GCUGUC---GGCGGCGC-C- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.