miRNA display CGI


Results 61 - 80 of 877 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6368 3' -59.3 NC_001847.1 + 26720 0.66 0.789328
Target:  5'- gUCGCCAc---CGACuguaccuCCGCCGCGGc -3'
miRNA:   3'- gAGCGGUugcaGCUGuc-----GGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 67982 0.66 0.789328
Target:  5'- gUCGaCCGGCGgcuuggggCGGCcgguauuacGCCGCCGuCGGa -3'
miRNA:   3'- gAGC-GGUUGCa-------GCUGu--------CGGCGGC-GCC- -5'
6368 3' -59.3 NC_001847.1 + 3851 0.66 0.789328
Target:  5'- -cCGCCccaGACGUaGACGG-CGCCGgGGc -3'
miRNA:   3'- gaGCGG---UUGCAgCUGUCgGCGGCgCC- -5'
6368 3' -59.3 NC_001847.1 + 55339 0.66 0.789328
Target:  5'- aUgGCCGcuCG-CGGCGGUgcugaacgCGCCGCGGg -3'
miRNA:   3'- gAgCGGUu-GCaGCUGUCG--------GCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 62126 0.66 0.78844
Target:  5'- gUUGCCcaggucugugagcGGCGUgCGcAUGGCCGCgGCGGc -3'
miRNA:   3'- gAGCGG-------------UUGCA-GC-UGUCGGCGgCGCC- -5'
6368 3' -59.3 NC_001847.1 + 59370 0.66 0.783983
Target:  5'- -gCGgCAGCGgCGGCGGCCggcaaaaaauacggaGCCgGCGGa -3'
miRNA:   3'- gaGCgGUUGCaGCUGUCGG---------------CGG-CGCC- -5'
6368 3' -59.3 NC_001847.1 + 131310 0.66 0.780394
Target:  5'- -aCGCCuucuggcgaGGCGUggccCGGCAGCgCGCCGCc- -3'
miRNA:   3'- gaGCGG---------UUGCA----GCUGUCG-GCGGCGcc -5'
6368 3' -59.3 NC_001847.1 + 71186 0.66 0.780394
Target:  5'- gUCGCgCAGCGcCGGC-GCCGgCGCc- -3'
miRNA:   3'- gAGCG-GUUGCaGCUGuCGGCgGCGcc -5'
6368 3' -59.3 NC_001847.1 + 107132 0.66 0.780394
Target:  5'- gCUCGUaAGCG-CGGCAcGCCGCgcgcugcagCGCGGc -3'
miRNA:   3'- -GAGCGgUUGCaGCUGU-CGGCG---------GCGCC- -5'
6368 3' -59.3 NC_001847.1 + 53305 0.66 0.780394
Target:  5'- aUCGCCGccaguGCGgcgggCGACAGgacggcgcgccCCGCCGCc- -3'
miRNA:   3'- gAGCGGU-----UGCa----GCUGUC-----------GGCGGCGcc -5'
6368 3' -59.3 NC_001847.1 + 119861 0.66 0.780394
Target:  5'- --gGUCAGCGUCGggaucggcauuGCGGCUGCgGCGn -3'
miRNA:   3'- gagCGGUUGCAGC-----------UGUCGGCGgCGCc -5'
6368 3' -59.3 NC_001847.1 + 105836 0.66 0.780394
Target:  5'- gCUCGCU--UGUCcGCGGCCGCgGCc- -3'
miRNA:   3'- -GAGCGGuuGCAGcUGUCGGCGgCGcc -5'
6368 3' -59.3 NC_001847.1 + 103790 0.66 0.780394
Target:  5'- gCUCGCCGGCGgcgUG-UAGaaGCCGCa- -3'
miRNA:   3'- -GAGCGGUUGCa--GCuGUCggCGGCGcc -5'
6368 3' -59.3 NC_001847.1 + 96835 0.66 0.780394
Target:  5'- -gCGCgGGCGUUGGCuacacgguuGCCGCUGCc- -3'
miRNA:   3'- gaGCGgUUGCAGCUGu--------CGGCGGCGcc -5'
6368 3' -59.3 NC_001847.1 + 81234 0.66 0.780394
Target:  5'- gUCGCCucCGggCGG-GGCCGUCGCGa -3'
miRNA:   3'- gAGCGGuuGCa-GCUgUCGGCGGCGCc -5'
6368 3' -59.3 NC_001847.1 + 50090 0.66 0.780394
Target:  5'- -gCGCCccuGAUGcUCGGcCAGCUGCUGgGGg -3'
miRNA:   3'- gaGCGG---UUGC-AGCU-GUCGGCGGCgCC- -5'
6368 3' -59.3 NC_001847.1 + 28497 0.66 0.780394
Target:  5'- -aCGCCuucuggcgaGGCGUggccCGGCAGCgCGCCGCc- -3'
miRNA:   3'- gaGCGG---------UUGCA----GCUGUCG-GCGGCGcc -5'
6368 3' -59.3 NC_001847.1 + 82123 0.66 0.780394
Target:  5'- --gGCCcgAGCG-CGcaGCGGCCGCCGCu- -3'
miRNA:   3'- gagCGG--UUGCaGC--UGUCGGCGGCGcc -5'
6368 3' -59.3 NC_001847.1 + 16288 0.66 0.780394
Target:  5'- -aCGCCGGCGggUCGACGuauaCCGucacCCGCGGc -3'
miRNA:   3'- gaGCGGUUGC--AGCUGUc---GGC----GGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 93612 0.66 0.780394
Target:  5'- aUCGCCcAgGUgcuccggcCGGC-GCgGCCGCGGa -3'
miRNA:   3'- gAGCGGuUgCA--------GCUGuCGgCGGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.