miRNA display CGI


Results 81 - 100 of 877 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6368 3' -59.3 NC_001847.1 + 82123 0.66 0.780394
Target:  5'- --gGCCcgAGCG-CGcaGCGGCCGCCGCu- -3'
miRNA:   3'- gagCGG--UUGCaGC--UGUCGGCGGCGcc -5'
6368 3' -59.3 NC_001847.1 + 96835 0.66 0.780394
Target:  5'- -gCGCgGGCGUUGGCuacacgguuGCCGCUGCc- -3'
miRNA:   3'- gaGCGgUUGCAGCUGu--------CGGCGGCGcc -5'
6368 3' -59.3 NC_001847.1 + 103790 0.66 0.780394
Target:  5'- gCUCGCCGGCGgcgUG-UAGaaGCCGCa- -3'
miRNA:   3'- -GAGCGGUUGCa--GCuGUCggCGGCGcc -5'
6368 3' -59.3 NC_001847.1 + 105836 0.66 0.780394
Target:  5'- gCUCGCU--UGUCcGCGGCCGCgGCc- -3'
miRNA:   3'- -GAGCGGuuGCAGcUGUCGGCGgCGcc -5'
6368 3' -59.3 NC_001847.1 + 70240 0.66 0.780394
Target:  5'- -cCGCCGAUGUCGcuGCuGgUGCCGCu- -3'
miRNA:   3'- gaGCGGUUGCAGC--UGuCgGCGGCGcc -5'
6368 3' -59.3 NC_001847.1 + 47802 0.66 0.780394
Target:  5'- -gCGCCcGCGaUCGGCuccaGGuuGuCCGCGGu -3'
miRNA:   3'- gaGCGGuUGC-AGCUG----UCggC-GGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 107132 0.66 0.780394
Target:  5'- gCUCGUaAGCG-CGGCAcGCCGCgcgcugcagCGCGGc -3'
miRNA:   3'- -GAGCGgUUGCaGCUGU-CGGCG---------GCGCC- -5'
6368 3' -59.3 NC_001847.1 + 16288 0.66 0.780394
Target:  5'- -aCGCCGGCGggUCGACGuauaCCGucacCCGCGGc -3'
miRNA:   3'- gaGCGGUUGC--AGCUGUc---GGC----GGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 71186 0.66 0.780394
Target:  5'- gUCGCgCAGCGcCGGC-GCCGgCGCc- -3'
miRNA:   3'- gAGCG-GUUGCaGCUGuCGGCgGCGcc -5'
6368 3' -59.3 NC_001847.1 + 97327 0.66 0.780394
Target:  5'- -gCGUCGGCGUCG-CGcCCGCC-CGGc -3'
miRNA:   3'- gaGCGGUUGCAGCuGUcGGCGGcGCC- -5'
6368 3' -59.3 NC_001847.1 + 116958 0.66 0.780394
Target:  5'- cCUCGCCGcGCGUCcGCcaugGGCCcGCUGgGGc -3'
miRNA:   3'- -GAGCGGU-UGCAGcUG----UCGG-CGGCgCC- -5'
6368 3' -59.3 NC_001847.1 + 119861 0.66 0.780394
Target:  5'- --gGUCAGCGUCGggaucggcauuGCGGCUGCgGCGn -3'
miRNA:   3'- gagCGGUUGCAGC-----------UGUCGGCGgCGCc -5'
6368 3' -59.3 NC_001847.1 + 34188 0.66 0.779494
Target:  5'- -gCGCCGAgccccgcuguuacCG-CGGCGGCuaccagcacCGCCGCGGc -3'
miRNA:   3'- gaGCGGUU-------------GCaGCUGUCG---------GCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 15552 0.66 0.77769
Target:  5'- gUCGCCGggugGCGcgggggaacccccaUCGGCGGCagGCgGCGGc -3'
miRNA:   3'- gAGCGGU----UGC--------------AGCUGUCGg-CGgCGCC- -5'
6368 3' -59.3 NC_001847.1 + 83707 0.66 0.774974
Target:  5'- gUCGCCGuccAUGUCGcgcGCGggcggcuccgucugcGCCGCCGCa- -3'
miRNA:   3'- gAGCGGU---UGCAGC---UGU---------------CGGCGGCGcc -5'
6368 3' -59.3 NC_001847.1 + 62688 0.66 0.771335
Target:  5'- -aCGCCGugGU--GCAG-CGCCGCGu -3'
miRNA:   3'- gaGCGGUugCAgcUGUCgGCGGCGCc -5'
6368 3' -59.3 NC_001847.1 + 54219 0.66 0.771335
Target:  5'- uUCgGCCAGCa-CGGCGGCCacgGCCGCuuGGg -3'
miRNA:   3'- gAG-CGGUUGcaGCUGUCGG---CGGCG--CC- -5'
6368 3' -59.3 NC_001847.1 + 44595 0.66 0.771335
Target:  5'- cCUCGCgcGCGgCGAgGGCCGCCaggGCGc -3'
miRNA:   3'- -GAGCGguUGCaGCUgUCGGCGG---CGCc -5'
6368 3' -59.3 NC_001847.1 + 29453 0.66 0.771335
Target:  5'- -aCGCgCGGCG-CGGCGGcCCGCgCGuCGGc -3'
miRNA:   3'- gaGCG-GUUGCaGCUGUC-GGCG-GC-GCC- -5'
6368 3' -59.3 NC_001847.1 + 107026 0.66 0.771335
Target:  5'- -aCGCCGGCcaugaaaUCGGCGGUguCGCgCGCGGc -3'
miRNA:   3'- gaGCGGUUGc------AGCUGUCG--GCG-GCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.