miRNA display CGI


Results 41 - 60 of 877 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6368 3' -59.3 NC_001847.1 + 4301 0.66 0.792864
Target:  5'- cCUCGgcuUCGAUGgCGGCGGCUaugacggccgcuucgGCCGCGGc -3'
miRNA:   3'- -GAGC---GGUUGCaGCUGUCGG---------------CGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 4402 0.76 0.264874
Target:  5'- gUCGCCGcCGUCGAC-GCCGaCgGCGGc -3'
miRNA:   3'- gAGCGGUuGCAGCUGuCGGC-GgCGCC- -5'
6368 3' -59.3 NC_001847.1 + 4524 0.78 0.204334
Target:  5'- -gCGCaCGACGUgccucgCGGCGGCCGCcCGCGGg -3'
miRNA:   3'- gaGCG-GUUGCA------GCUGUCGGCG-GCGCC- -5'
6368 3' -59.3 NC_001847.1 + 4605 0.66 0.76216
Target:  5'- -cCGCCAcaGC-UCGGcCAGCuCGgCGCGGg -3'
miRNA:   3'- gaGCGGU--UGcAGCU-GUCG-GCgGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 4638 0.66 0.780394
Target:  5'- -cCGCCGGCGcUCGcgcgccuCAGCCcgacgcGCCGCGu -3'
miRNA:   3'- gaGCGGUUGC-AGCu------GUCGG------CGGCGCc -5'
6368 3' -59.3 NC_001847.1 + 4970 0.67 0.743489
Target:  5'- -gCGCCGGgGg-GGCAGCUggggugcggcgGCCGCGGc -3'
miRNA:   3'- gaGCGGUUgCagCUGUCGG-----------CGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 5198 0.7 0.556987
Target:  5'- -cCGCgAGCG-CGGCaAGCgCGCCGCGa -3'
miRNA:   3'- gaGCGgUUGCaGCUG-UCG-GCGGCGCc -5'
6368 3' -59.3 NC_001847.1 + 5203 0.73 0.37761
Target:  5'- cCUCGCCGGCucucUCGccGCGGCgGCCgGCGGg -3'
miRNA:   3'- -GAGCGGUUGc---AGC--UGUCGgCGG-CGCC- -5'
6368 3' -59.3 NC_001847.1 + 5315 0.68 0.636025
Target:  5'- --gGCgGGCGUUGaACAGCuCGuuGCGGu -3'
miRNA:   3'- gagCGgUUGCAGC-UGUCG-GCggCGCC- -5'
6368 3' -59.3 NC_001847.1 + 5333 0.68 0.635031
Target:  5'- --gGCCGGCcgGUCGGagcuggcUAGCCgGCCGCGGc -3'
miRNA:   3'- gagCGGUUG--CAGCU-------GUCGG-CGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 5434 0.66 0.771335
Target:  5'- gCUCGCUcccccuGCGUguugccCGACGGCgGUgGCGGc -3'
miRNA:   3'- -GAGCGGu-----UGCA------GCUGUCGgCGgCGCC- -5'
6368 3' -59.3 NC_001847.1 + 5479 0.67 0.695353
Target:  5'- -gCGgCGGCGgCaGCGGCCGCCGCa- -3'
miRNA:   3'- gaGCgGUUGCaGcUGUCGGCGGCGcc -5'
6368 3' -59.3 NC_001847.1 + 5541 0.66 0.76216
Target:  5'- cCUCGCacCGGCGgCGGCGGCaGCaGCGGc -3'
miRNA:   3'- -GAGCG--GUUGCaGCUGUCGgCGgCGCC- -5'
6368 3' -59.3 NC_001847.1 + 5562 0.66 0.771335
Target:  5'- gUCGCCGuccGCGaCGGCaaaugccugguGGCCGC-GCGGu -3'
miRNA:   3'- gAGCGGU---UGCaGCUG-----------UCGGCGgCGCC- -5'
6368 3' -59.3 NC_001847.1 + 5608 0.67 0.724451
Target:  5'- aCUCGguaGACGggCGugGG-CGCCGCGGu -3'
miRNA:   3'- -GAGCgg-UUGCa-GCugUCgGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 5671 0.7 0.537595
Target:  5'- -gCGCCGucGCGcgCGGCGGCgGCCGCc- -3'
miRNA:   3'- gaGCGGU--UGCa-GCUGUCGgCGGCGcc -5'
6368 3' -59.3 NC_001847.1 + 5898 0.73 0.410409
Target:  5'- cCUCGCgcGCGUuggucUGGCAGCCGCUagGCGGa -3'
miRNA:   3'- -GAGCGguUGCA-----GCUGUCGGCGG--CGCC- -5'
6368 3' -59.3 NC_001847.1 + 6065 0.68 0.644971
Target:  5'- -gUGCCGaaaaaaaGCGUCaACGGCgCGCuCGCGGa -3'
miRNA:   3'- gaGCGGU-------UGCAGcUGUCG-GCG-GCGCC- -5'
6368 3' -59.3 NC_001847.1 + 6360 0.71 0.508967
Target:  5'- -gCGCC-GCGggCG-UAGCCGCUGCGGc -3'
miRNA:   3'- gaGCGGuUGCa-GCuGUCGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 6843 0.67 0.705114
Target:  5'- cCUCGgCGAgGugcUCGAgCAGCaCGCgCGCGGg -3'
miRNA:   3'- -GAGCgGUUgC---AGCU-GUCG-GCG-GCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.