miRNA display CGI


Results 61 - 80 of 877 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6368 3' -59.3 NC_001847.1 + 6882 0.7 0.547264
Target:  5'- cCUUGCCGaggagcaguGCGUCGGCgAGCgCGCgCGCGc -3'
miRNA:   3'- -GAGCGGU---------UGCAGCUG-UCG-GCG-GCGCc -5'
6368 3' -59.3 NC_001847.1 + 7060 0.73 0.409568
Target:  5'- uUCGCCAccaaggcACG-CGGCgAGCCGCC-CGGg -3'
miRNA:   3'- gAGCGGU-------UGCaGCUG-UCGGCGGcGCC- -5'
6368 3' -59.3 NC_001847.1 + 7171 0.67 0.695353
Target:  5'- gCUCGCCcgGGCGguucauccgcuUCGGCuuuaGGCaGCCGCGGc -3'
miRNA:   3'- -GAGCGG--UUGC-----------AGCUG----UCGgCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 7429 0.68 0.655894
Target:  5'- gCUUGCCAAgG-CG-CAGUCGCuagCGCGGa -3'
miRNA:   3'- -GAGCGGUUgCaGCuGUCGGCG---GCGCC- -5'
6368 3' -59.3 NC_001847.1 + 7898 0.72 0.444921
Target:  5'- --aGCCGcgcgggGCGcgCGGCGGCCGCCGCu- -3'
miRNA:   3'- gagCGGU------UGCa-GCUGUCGGCGGCGcc -5'
6368 3' -59.3 NC_001847.1 + 8380 0.67 0.743489
Target:  5'- -gCGgCAGCGUgGGCGuCUGCCGCGu -3'
miRNA:   3'- gaGCgGUUGCAgCUGUcGGCGGCGCc -5'
6368 3' -59.3 NC_001847.1 + 8627 0.74 0.361886
Target:  5'- -cCGCCGGgGga-GCGGCCGCUGCGGa -3'
miRNA:   3'- gaGCGGUUgCagcUGUCGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 8970 0.68 0.685543
Target:  5'- gUCGCCGcucaucuuGCgGUUG-UGGCCGCCGCGc -3'
miRNA:   3'- gAGCGGU--------UG-CAGCuGUCGGCGGCGCc -5'
6368 3' -59.3 NC_001847.1 + 9553 0.71 0.498629
Target:  5'- -gCGCCAGCG-CuGCAGCCGuccagcccgccgcCCGCGGc -3'
miRNA:   3'- gaGCGGUUGCaGcUGUCGGC-------------GGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 9733 0.68 0.685543
Target:  5'- -cCGgCGGCGcCGggGCAGUCGCCGuCGGu -3'
miRNA:   3'- gaGCgGUUGCaGC--UGUCGGCGGC-GCC- -5'
6368 3' -59.3 NC_001847.1 + 10042 0.69 0.59631
Target:  5'- uCUCGCCGccGCGaaCGACaucuuGGCCGC-GCGGg -3'
miRNA:   3'- -GAGCGGU--UGCa-GCUG-----UCGGCGgCGCC- -5'
6368 3' -59.3 NC_001847.1 + 10297 0.7 0.537595
Target:  5'- gCUCGCCAGucaGUgCGGCGguGCUGCgGCGGc -3'
miRNA:   3'- -GAGCGGUUg--CA-GCUGU--CGGCGgCGCC- -5'
6368 3' -59.3 NC_001847.1 + 10566 0.68 0.68456
Target:  5'- -gCGCCGggcccgGCGcCGGCGGCCcccccgcGCgCGCGGg -3'
miRNA:   3'- gaGCGGU------UGCaGCUGUCGG-------CG-GCGCC- -5'
6368 3' -59.3 NC_001847.1 + 10875 0.67 0.695353
Target:  5'- -gCGCgGGCGcccaGGCAGaCCGCCuGCGGc -3'
miRNA:   3'- gaGCGgUUGCag--CUGUC-GGCGG-CGCC- -5'
6368 3' -59.3 NC_001847.1 + 11325 0.66 0.76216
Target:  5'- --gGCCGGCGggCGGCuggcGCCGgaGCGGg -3'
miRNA:   3'- gagCGGUUGCa-GCUGu---CGGCggCGCC- -5'
6368 3' -59.3 NC_001847.1 + 11411 0.67 0.724451
Target:  5'- -gCGCCGcCGcCGAU-GCCGCCGCc- -3'
miRNA:   3'- gaGCGGUuGCaGCUGuCGGCGGCGcc -5'
6368 3' -59.3 NC_001847.1 + 11486 0.69 0.59631
Target:  5'- uUCGCUAuaauaGCaGUCcACAuCCGCCGCGGg -3'
miRNA:   3'- gAGCGGU-----UG-CAGcUGUcGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 11561 0.74 0.331824
Target:  5'- -gCGcCCAGCGgguGCGGCUGCCGCGGu -3'
miRNA:   3'- gaGC-GGUUGCagcUGUCGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 11676 0.7 0.518442
Target:  5'- --aGCCGAgccCG-CGGCGGCCGUCGcCGGg -3'
miRNA:   3'- gagCGGUU---GCaGCUGUCGGCGGC-GCC- -5'
6368 3' -59.3 NC_001847.1 + 12070 0.69 0.586426
Target:  5'- -aCGCCGAgGcCG-CGGagCGCCGCGGg -3'
miRNA:   3'- gaGCGGUUgCaGCuGUCg-GCGGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.