miRNA display CGI


Results 81 - 100 of 877 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6368 3' -59.3 NC_001847.1 + 12364 0.72 0.453801
Target:  5'- gCUCGggAGCGUCGGCGGCUGCgGCcucGGg -3'
miRNA:   3'- -GAGCggUUGCAGCUGUCGGCGgCG---CC- -5'
6368 3' -59.3 NC_001847.1 + 12625 0.7 0.566759
Target:  5'- cCUCaaCAugGa-GGCGGCCGCUGCGGc -3'
miRNA:   3'- -GAGcgGUugCagCUGUCGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 12903 0.69 0.616145
Target:  5'- -aCGCggaAGCGcgCGcCGuGCCGCCGCGGg -3'
miRNA:   3'- gaGCGg--UUGCa-GCuGU-CGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 13010 0.69 0.626083
Target:  5'- -gCGCCcuGCG-CGcCGGCCGUCGCGa -3'
miRNA:   3'- gaGCGGu-UGCaGCuGUCGGCGGCGCc -5'
6368 3' -59.3 NC_001847.1 + 13066 0.67 0.705114
Target:  5'- gUCGCCGGCGUCGcCgaugAGCCgGUCGUacaGGa -3'
miRNA:   3'- gAGCGGUUGCAGCuG----UCGG-CGGCG---CC- -5'
6368 3' -59.3 NC_001847.1 + 13106 0.66 0.771335
Target:  5'- -aCGCCGcCGuccuccUCGGCuGCgGCCGCGa -3'
miRNA:   3'- gaGCGGUuGC------AGCUGuCGgCGGCGCc -5'
6368 3' -59.3 NC_001847.1 + 13373 0.66 0.752875
Target:  5'- -cCGCgAACGgcgCGcACguccgGGCgCGCCGCGGg -3'
miRNA:   3'- gaGCGgUUGCa--GC-UG-----UCG-GCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 13514 0.67 0.705114
Target:  5'- -gCGCCAAgauccCGUaCGAgCGGCUGCCGCu- -3'
miRNA:   3'- gaGCGGUU-----GCA-GCU-GUCGGCGGCGcc -5'
6368 3' -59.3 NC_001847.1 + 13870 0.66 0.798128
Target:  5'- -cUGCUAGCGgacgCGGCA-CUGCCGCuGGu -3'
miRNA:   3'- gaGCGGUUGCa---GCUGUcGGCGGCG-CC- -5'
6368 3' -59.3 NC_001847.1 + 14162 0.71 0.490242
Target:  5'- -cCGCUAGgG-CGACGGCCGCgcuuaCGCGGc -3'
miRNA:   3'- gaGCGGUUgCaGCUGUCGGCG-----GCGCC- -5'
6368 3' -59.3 NC_001847.1 + 14297 0.69 0.586426
Target:  5'- cCUCuCCGGCGUCG-CGGCC-CCGCu- -3'
miRNA:   3'- -GAGcGGUUGCAGCuGUCGGcGGCGcc -5'
6368 3' -59.3 NC_001847.1 + 14360 0.68 0.636025
Target:  5'- -cUGCCGACGcUCGcagaugccACGGCCgcgGCCGUGGu -3'
miRNA:   3'- gaGCGGUUGC-AGC--------UGUCGG---CGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 14393 0.69 0.606218
Target:  5'- gCUCGCCGagcugGCGUCGA-GGCC-CCGCu- -3'
miRNA:   3'- -GAGCGGU-----UGCAGCUgUCGGcGGCGcc -5'
6368 3' -59.3 NC_001847.1 + 14440 0.66 0.789328
Target:  5'- cCUCGaCGGCGcCGGgGugcGCgGCCGCGGc -3'
miRNA:   3'- -GAGCgGUUGCaGCUgU---CGgCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 14658 0.66 0.76216
Target:  5'- -gCGCUGACGugaacaUCGACGGCgCGgCCgGCGGc -3'
miRNA:   3'- gaGCGGUUGC------AGCUGUCG-GC-GG-CGCC- -5'
6368 3' -59.3 NC_001847.1 + 15241 0.72 0.43614
Target:  5'- -gCGCCGGCGgcggCGGCGGCCacGCaCGCGa -3'
miRNA:   3'- gaGCGGUUGCa---GCUGUCGG--CG-GCGCc -5'
6368 3' -59.3 NC_001847.1 + 15307 0.71 0.499565
Target:  5'- --gGCaCGGCGUCGGgGGCCGCgggcguaGCGGg -3'
miRNA:   3'- gagCG-GUUGCAGCUgUCGGCGg------CGCC- -5'
6368 3' -59.3 NC_001847.1 + 15512 0.68 0.675691
Target:  5'- --aGUCGAUGcggcUCGGCGGgaGCCGCGGg -3'
miRNA:   3'- gagCGGUUGC----AGCUGUCggCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 15552 0.66 0.77769
Target:  5'- gUCGCCGggugGCGcgggggaacccccaUCGGCGGCagGCgGCGGc -3'
miRNA:   3'- gAGCGGU----UGC--------------AGCUGUCGg-CGgCGCC- -5'
6368 3' -59.3 NC_001847.1 + 15557 0.7 0.518442
Target:  5'- -gCGCgCGGcCGUCGggccGCGGCCGCCGCu- -3'
miRNA:   3'- gaGCG-GUU-GCAGC----UGUCGGCGGCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.