miRNA display CGI

Results 101 - 120 of 877 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
6368	3'	-59.3	NC_001847.1	+	15775	0.67	0.724451
	Target:  5'- -cCGCUuuCGcCGGCGGCaagCGCCGCGcGg -3' miRNA:   3'- gaGCGGuuGCaGCUGUCG---GCGGCGC-C- -5'
6368	3'	-59.3	NC_001847.1	+	15890	0.68	0.635031
	Target:  5'- -gCGCCGACGagcucgcuaUCGACGGCCccaugccugccccGCCGCc- -3' miRNA:   3'- gaGCGGUUGC---------AGCUGUCGG-------------CGGCGcc -5'
6368	3'	-59.3	NC_001847.1	+	15987	0.69	0.576574
	Target:  5'- -cCGCCGcccCG-CGGCGGCCGCgGCGc -3' miRNA:   3'- gaGCGGUu--GCaGCUGUCGGCGgCGCc -5'
6368	3'	-59.3	NC_001847.1	+	16047	0.69	0.576574
	Target:  5'- -cCGCCGcccCG-CGGCGGCCGCgGCGc -3' miRNA:   3'- gaGCGGUu--GCaGCUGUCGGCGgCGCc -5'
6368	3'	-59.3	NC_001847.1	+	16153	0.75	0.317497
	Target:  5'- -gCGCCAGCauGUCG-CAcGCCGCCGCGc -3' miRNA:   3'- gaGCGGUUG--CAGCuGU-CGGCGGCGCc -5'
6368	3'	-59.3	NC_001847.1	+	16182	0.69	0.606218
	Target:  5'- gUCGCgUAGCGcaccUCGACgGGCUGCuCGCGGc -3' miRNA:   3'- gAGCG-GUUGC----AGCUG-UCGGCG-GCGCC- -5'
6368	3'	-59.3	NC_001847.1	+	16210	0.69	0.606218
	Target:  5'- -gCGCCAugcgGCGUUG-CAGCCuCCGCGu -3' miRNA:   3'- gaGCGGU----UGCAGCuGUCGGcGGCGCc -5'
6368	3'	-59.3	NC_001847.1	+	16288	0.66	0.780394
	Target:  5'- -aCGCCGGCGggUCGACGuauaCCGucacCCGCGGc -3' miRNA:   3'- gaGCGGUUGC--AGCUGUc---GGC----GGCGCC- -5'
6368	3'	-59.3	NC_001847.1	+	16392	0.71	0.490242
	Target:  5'- uUCGCCcGC-UCGcaGCAGCCGC-GCGGg -3' miRNA:   3'- gAGCGGuUGcAGC--UGUCGGCGgCGCC- -5'
6368	3'	-59.3	NC_001847.1	+	16434	0.66	0.752875
	Target:  5'- gUCGCC--CGUCGGggauauauaccCAGCCgggGCUGCGGc -3' miRNA:   3'- gAGCGGuuGCAGCU-----------GUCGG---CGGCGCC- -5'
6368	3'	-59.3	NC_001847.1	+	17077	0.66	0.789328
	Target:  5'- --gGCCGGCGU-GcCAGCCGCguaaaaGCGGc -3' miRNA:   3'- gagCGGUUGCAgCuGUCGGCGg-----CGCC- -5'
6368	3'	-59.3	NC_001847.1	+	17654	0.76	0.264874
	Target:  5'- --aGCCGACGUCGACgacgucGGCgGCuCGCGGu -3' miRNA:   3'- gagCGGUUGCAGCUG------UCGgCG-GCGCC- -5'
6368	3'	-59.3	NC_001847.1	+	17690	0.69	0.586426
	Target:  5'- -cCGCCAgugGCGUUGuCGGCCacGCCGCa- -3' miRNA:   3'- gaGCGGU---UGCAGCuGUCGG--CGGCGcc -5'
6368	3'	-59.3	NC_001847.1	+	17860	0.66	0.798128
	Target:  5'- gUUGCCAGCGcCGcCgGGUCGCCcguccucggGCGGg -3' miRNA:   3'- gAGCGGUUGCaGCuG-UCGGCGG---------CGCC- -5'
6368	3'	-59.3	NC_001847.1	+	18210	0.66	0.798128
	Target:  5'- uCUCggGCUGGCGgucucUCGGCGGUCGUgcgCGCGGg -3' miRNA:   3'- -GAG--CGGUUGC-----AGCUGUCGGCG---GCGCC- -5'
6368	3'	-59.3	NC_001847.1	+	18396	0.67	0.731152
	Target:  5'- cCUCGCCcugcgggcccgcggGGCuGUCGaACAG-CGCgCGCGGg -3' miRNA:   3'- -GAGCGG--------------UUG-CAGC-UGUCgGCG-GCGCC- -5'
6368	3'	-59.3	NC_001847.1	+	18536	0.66	0.76216
	Target:  5'- -gCGCCGcCGUCcGC-GCCGCagaGCGGc -3' miRNA:   3'- gaGCGGUuGCAGcUGuCGGCGg--CGCC- -5'
6368	3'	-59.3	NC_001847.1	+	18700	0.67	0.743489
	Target:  5'- --gGCCcGCGUC-ACcGCCagcGCCGCGGg -3' miRNA:   3'- gagCGGuUGCAGcUGuCGG---CGGCGCC- -5'
6368	3'	-59.3	NC_001847.1	+	18759	0.69	0.606218
	Target:  5'- -cCGCCGccGCGgcuaaggCGGCGGCCGacagcgcgagcuCCGCGGc -3' miRNA:   3'- gaGCGGU--UGCa------GCUGUCGGC------------GGCGCC- -5'
6368	3'	-59.3	NC_001847.1	+	18888	0.67	0.724451
	Target:  5'- -gCGCCAGaGUCcGCAG-CGCCGCGu -3' miRNA:   3'- gaGCGGUUgCAGcUGUCgGCGGCGCc -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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