miRNA display CGI


Results 21 - 40 of 877 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6368 3' -59.3 NC_001847.1 + 132476 0.7 0.566759
Target:  5'- --aGCCGAUGcCGGCcgAGCCGCCG-GGc -3'
miRNA:   3'- gagCGGUUGCaGCUG--UCGGCGGCgCC- -5'
6368 3' -59.3 NC_001847.1 + 132387 0.79 0.16408
Target:  5'- -gCGCCGGCGcCGGC-GCCGCCGCGc -3'
miRNA:   3'- gaGCGGUUGCaGCUGuCGGCGGCGCc -5'
6368 3' -59.3 NC_001847.1 + 132335 0.71 0.471844
Target:  5'- -gUGCCGGCGcggcUGGCGGCCGCgcuCGCGGc -3'
miRNA:   3'- gaGCGGUUGCa---GCUGUCGGCG---GCGCC- -5'
6368 3' -59.3 NC_001847.1 + 132266 0.66 0.771335
Target:  5'- -aCGCgCGGCG-CGGCGGcCCGCgCGuCGGc -3'
miRNA:   3'- gaGCG-GUUGCaGCUGUC-GGCG-GC-GCC- -5'
6368 3' -59.3 NC_001847.1 + 132192 0.7 0.556987
Target:  5'- -gCGCCGA----GGCGGCCGCCGCGc -3'
miRNA:   3'- gaGCGGUUgcagCUGUCGGCGGCGCc -5'
6368 3' -59.3 NC_001847.1 + 132006 0.69 0.593342
Target:  5'- -cCGCCGGCGccgcCGGgcucccggugcucuCGGCCGCgGCGGg -3'
miRNA:   3'- gaGCGGUUGCa---GCU--------------GUCGGCGgCGCC- -5'
6368 3' -59.3 NC_001847.1 + 131969 0.66 0.798128
Target:  5'- gUCGCCugccgcgaGGCGcuggaGGCGGcCCGCCGCGn -3'
miRNA:   3'- gAGCGG--------UUGCag---CUGUC-GGCGGCGCc -5'
6368 3' -59.3 NC_001847.1 + 131946 0.7 0.527987
Target:  5'- -gCGCCGGCGauggcggCGACGGCgGCgagaGCGGg -3'
miRNA:   3'- gaGCGGUUGCa------GCUGUCGgCGg---CGCC- -5'
6368 3' -59.3 NC_001847.1 + 131875 0.69 0.606218
Target:  5'- gCUCGCCGgccgcgcgGCGcCGGCGccccuGCCGCCgGCGa -3'
miRNA:   3'- -GAGCGGU--------UGCaGCUGU-----CGGCGG-CGCc -5'
6368 3' -59.3 NC_001847.1 + 131821 0.7 0.537595
Target:  5'- --gGCCGGCGcCGGCGGCagcggcgcccgCGCCGCGc -3'
miRNA:   3'- gagCGGUUGCaGCUGUCG-----------GCGGCGCc -5'
6368 3' -59.3 NC_001847.1 + 131802 0.66 0.759385
Target:  5'- -cCGgCAGCGUCGGCAuaacgcaccccugcGCgGCCGCc- -3'
miRNA:   3'- gaGCgGUUGCAGCUGU--------------CGgCGGCGcc -5'
6368 3' -59.3 NC_001847.1 + 131680 0.66 0.752875
Target:  5'- -aCGCCAugGcCGcGCAGaacgCGCUGUGGg -3'
miRNA:   3'- gaGCGGUugCaGC-UGUCg---GCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 131432 0.68 0.675691
Target:  5'- -gCGCU-ACG-CGGCGGCCGCggggccCGCGGc -3'
miRNA:   3'- gaGCGGuUGCaGCUGUCGGCG------GCGCC- -5'
6368 3' -59.3 NC_001847.1 + 131310 0.66 0.780394
Target:  5'- -aCGCCuucuggcgaGGCGUggccCGGCAGCgCGCCGCc- -3'
miRNA:   3'- gaGCGG---------UUGCA----GCUGUCG-GCGGCGcc -5'
6368 3' -59.3 NC_001847.1 + 131268 0.7 0.537595
Target:  5'- -gCGCC-GCG-CGACgGGCCGCCGCc- -3'
miRNA:   3'- gaGCGGuUGCaGCUG-UCGGCGGCGcc -5'
6368 3' -59.3 NC_001847.1 + 131188 0.73 0.410409
Target:  5'- cCUCGCCGcCGgaGACGGCgcccccccCGCCGCGGc -3'
miRNA:   3'- -GAGCGGUuGCagCUGUCG--------GCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 130826 0.66 0.798128
Target:  5'- --gGCCGAagcggcCGUC-AUAGCCGCCGCc- -3'
miRNA:   3'- gagCGGUU------GCAGcUGUCGGCGGCGcc -5'
6368 3' -59.3 NC_001847.1 + 130778 0.69 0.626083
Target:  5'- gCUCGCgGucGCGguggaGGCGGCCGCgGcCGGg -3'
miRNA:   3'- -GAGCGgU--UGCag---CUGUCGGCGgC-GCC- -5'
6368 3' -59.3 NC_001847.1 + 130743 0.76 0.247044
Target:  5'- -cCGUCGGCGUCGACGGCggCGaCCGUGGc -3'
miRNA:   3'- gaGCGGUUGCAGCUGUCG--GC-GGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 130605 0.74 0.331824
Target:  5'- -gCGCCAcccGCG--GGCGGCCGCCGCGa -3'
miRNA:   3'- gaGCGGU---UGCagCUGUCGGCGGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.