miRNA display CGI


Results 41 - 60 of 877 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6368 3' -59.3 NC_001847.1 + 130515 0.69 0.626083
Target:  5'- -gCGCgAGCGcCGGCgGGCCGcCCGCGc -3'
miRNA:   3'- gaGCGgUUGCaGCUG-UCGGC-GGCGCc -5'
6368 3' -59.3 NC_001847.1 + 130144 0.68 0.645965
Target:  5'- -cCGCCGcCGcCGcgcuuugccGCGGCCGCCGCa- -3'
miRNA:   3'- gaGCGGUuGCaGC---------UGUCGGCGGCGcc -5'
6368 3' -59.3 NC_001847.1 + 130091 0.71 0.490242
Target:  5'- -cCGCCGuccguccCGUCGG-AGCCGCCGCcGGu -3'
miRNA:   3'- gaGCGGUu------GCAGCUgUCGGCGGCG-CC- -5'
6368 3' -59.3 NC_001847.1 + 129917 0.75 0.296887
Target:  5'- uUUGCCGcgcGCGcccCGcCGGCCGCCGCGGc -3'
miRNA:   3'- gAGCGGU---UGCa--GCuGUCGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 129657 0.66 0.798128
Target:  5'- --gGUCGAgGUugCGGCGGCCGCUGCc- -3'
miRNA:   3'- gagCGGUUgCA--GCUGUCGGCGGCGcc -5'
6368 3' -59.3 NC_001847.1 + 129592 0.7 0.537595
Target:  5'- gUCGCgGACGgcgaCGACugGGCCGCCGUc- -3'
miRNA:   3'- gAGCGgUUGCa---GCUG--UCGGCGGCGcc -5'
6368 3' -59.3 NC_001847.1 + 129533 0.66 0.789328
Target:  5'- gUCGCCAc---CGACuguaccuCCGCCGCGGc -3'
miRNA:   3'- gAGCGGUugcaGCUGuc-----GGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 129048 0.66 0.798128
Target:  5'- cCUCGCgGGCGUCu-CGcGCCuCCGCGa -3'
miRNA:   3'- -GAGCGgUUGCAGcuGU-CGGcGGCGCc -5'
6368 3' -59.3 NC_001847.1 + 128795 0.71 0.508967
Target:  5'- -aCGCCcGCGgcgCGGuuGCCGCCGgGGc -3'
miRNA:   3'- gaGCGGuUGCa--GCUguCGGCGGCgCC- -5'
6368 3' -59.3 NC_001847.1 + 128458 0.7 0.518442
Target:  5'- -gCGCgcGCGccCGGcCGGCCGCCGCGGc -3'
miRNA:   3'- gaGCGguUGCa-GCU-GUCGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 128315 0.68 0.675691
Target:  5'- cCUCGCCGaggACGUC-ACcuuugcGCUGCaCGCGGa -3'
miRNA:   3'- -GAGCGGU---UGCAGcUGu-----CGGCG-GCGCC- -5'
6368 3' -59.3 NC_001847.1 + 128258 0.68 0.665806
Target:  5'- gCUCGCCGACGcacugcuccUCGGCaaGGCCcuacCCGCGc -3'
miRNA:   3'- -GAGCGGUUGC---------AGCUG--UCGGc---GGCGCc -5'
6368 3' -59.3 NC_001847.1 + 127472 0.66 0.798128
Target:  5'- gUCgGCCAuuacaAUGUUGcuuuCGGCCGCCauGCGGa -3'
miRNA:   3'- gAG-CGGU-----UGCAGCu---GUCGGCGG--CGCC- -5'
6368 3' -59.3 NC_001847.1 + 127333 0.76 0.264874
Target:  5'- -gCGCCGAgG-CGGcCGGCUGCCGCGGc -3'
miRNA:   3'- gaGCGGUUgCaGCU-GUCGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 127210 0.72 0.416329
Target:  5'- -aCGCCGcaagcugcaaaacgGCGggggaagaagCGGCGGCCGCCGCGc -3'
miRNA:   3'- gaGCGGU--------------UGCa---------GCUGUCGGCGGCGCc -5'
6368 3' -59.3 NC_001847.1 + 127065 0.72 0.453801
Target:  5'- cCUCGCCGugGUgGACAGgCCcccCCGCuGGc -3'
miRNA:   3'- -GAGCGGUugCAgCUGUC-GGc--GGCG-CC- -5'
6368 3' -59.3 NC_001847.1 + 127052 0.69 0.606218
Target:  5'- -gCGCC-GCGUCGcCGaucucGCCGCgGCGGu -3'
miRNA:   3'- gaGCGGuUGCAGCuGU-----CGGCGgCGCC- -5'
6368 3' -59.3 NC_001847.1 + 125556 0.66 0.76216
Target:  5'- -cCGCgGcuGCGgcUCGAUcGCgGCCGCGGg -3'
miRNA:   3'- gaGCGgU--UGC--AGCUGuCGgCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 125521 0.66 0.789328
Target:  5'- --gGCCGGCG-CGGCGGCgGgCGCa- -3'
miRNA:   3'- gagCGGUUGCaGCUGUCGgCgGCGcc -5'
6368 3' -59.3 NC_001847.1 + 125450 0.69 0.576574
Target:  5'- gCUgGCCGgaggacggGCGggucggCGGCAGCuCGCgGCGGg -3'
miRNA:   3'- -GAgCGGU--------UGCa-----GCUGUCG-GCGgCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.