miRNA display CGI


Results 61 - 80 of 877 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6368 3' -59.3 NC_001847.1 + 125212 0.66 0.771335
Target:  5'- gUC-CCAgACGcUGGCAGCCGCCuGcCGGg -3'
miRNA:   3'- gAGcGGU-UGCaGCUGUCGGCGG-C-GCC- -5'
6368 3' -59.3 NC_001847.1 + 124920 0.67 0.743489
Target:  5'- -gCGCCGGgGgCGACAGCgGgCGCGc -3'
miRNA:   3'- gaGCGGUUgCaGCUGUCGgCgGCGCc -5'
6368 3' -59.3 NC_001847.1 + 124551 0.68 0.689473
Target:  5'- --gGCCGGCGcCGGCccgcgcgcgcgggggGGCCGCCGgcgcCGGg -3'
miRNA:   3'- gagCGGUUGCaGCUG---------------UCGGCGGC----GCC- -5'
6368 3' -59.3 NC_001847.1 + 124428 0.72 0.444921
Target:  5'- aCUCGCUGGCGgCGcuuGGCCGgCGCGGg -3'
miRNA:   3'- -GAGCGGUUGCaGCug-UCGGCgGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 124312 0.66 0.771335
Target:  5'- -gCGCCGcCGUCGcgcgcaggugcuGCAGCaGCgCGCGGc -3'
miRNA:   3'- gaGCGGUuGCAGC------------UGUCGgCG-GCGCC- -5'
6368 3' -59.3 NC_001847.1 + 123985 0.7 0.547264
Target:  5'- gCUC-CCGACGcCGGuaguuUAGCCGCCGCa- -3'
miRNA:   3'- -GAGcGGUUGCaGCU-----GUCGGCGGCGcc -5'
6368 3' -59.3 NC_001847.1 + 123795 0.66 0.789328
Target:  5'- --gGCCuGCG-CGGCGGCgGCaGCGGc -3'
miRNA:   3'- gagCGGuUGCaGCUGUCGgCGgCGCC- -5'
6368 3' -59.3 NC_001847.1 + 123684 0.72 0.418882
Target:  5'- gCUCGCCAcGCGcaCGGUAGCCGCuggCGCGGg -3'
miRNA:   3'- -GAGCGGU-UGCa-GCUGUCGGCG---GCGCC- -5'
6368 3' -59.3 NC_001847.1 + 123497 0.68 0.675691
Target:  5'- -cCGCCGcaaGCGg-GGCcggggccagGGCUGCCGCGGg -3'
miRNA:   3'- gaGCGGU---UGCagCUG---------UCGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 123451 0.82 0.115525
Target:  5'- uUUGCCGGgcuuggccCGgCGACGGCCGCCGCGGg -3'
miRNA:   3'- gAGCGGUU--------GCaGCUGUCGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 122953 0.66 0.798128
Target:  5'- aUCGCUAucguaguCGUCGGCGcuGUCGCUGCu- -3'
miRNA:   3'- gAGCGGUu------GCAGCUGU--CGGCGGCGcc -5'
6368 3' -59.3 NC_001847.1 + 122911 0.68 0.636025
Target:  5'- aUCGCCGGCGcCGugAuugggGCCGCGGu -3'
miRNA:   3'- gAGCGGUUGCaGCugUcgg--CGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 122633 0.68 0.662834
Target:  5'- gUCGCCuuCGUCGuCuggcccggguucuuGGCCGCCcccgccgccacGCGGg -3'
miRNA:   3'- gAGCGGuuGCAGCuG--------------UCGGCGG-----------CGCC- -5'
6368 3' -59.3 NC_001847.1 + 122117 0.68 0.645965
Target:  5'- -gCGCUGACGcugcaggucgCGACGGCCGgCGCGc -3'
miRNA:   3'- gaGCGGUUGCa---------GCUGUCGGCgGCGCc -5'
6368 3' -59.3 NC_001847.1 + 122005 0.69 0.586426
Target:  5'- -cCGCCGGcCG-CGGCAGgCGgCGCGGc -3'
miRNA:   3'- gaGCGGUU-GCaGCUGUCgGCgGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 121602 0.68 0.636025
Target:  5'- gUCGUgCAGCGUCGcgcugccuagcgGCAGCCGCuCGUacGGg -3'
miRNA:   3'- gAGCG-GUUGCAGC------------UGUCGGCG-GCG--CC- -5'
6368 3' -59.3 NC_001847.1 + 121290 0.66 0.76216
Target:  5'- cCUCGCCAccaucaGCGaaGAauaaacGCCGCgCGCGGc -3'
miRNA:   3'- -GAGCGGU------UGCagCUgu----CGGCG-GCGCC- -5'
6368 3' -59.3 NC_001847.1 + 121191 0.68 0.649938
Target:  5'- gCUCGCCAcgggccgcagccgcaGC-UCGcGCAugacGCCGUCGCGGg -3'
miRNA:   3'- -GAGCGGU---------------UGcAGC-UGU----CGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 120985 0.68 0.665806
Target:  5'- -gCGCgGcCGUCGcccuaGCGGCCGCCcaggcGCGGg -3'
miRNA:   3'- gaGCGgUuGCAGC-----UGUCGGCGG-----CGCC- -5'
6368 3' -59.3 NC_001847.1 + 120500 0.68 0.665806
Target:  5'- gCUCG-CAGCGagCGGCGcGCgagCGCCGCGGu -3'
miRNA:   3'- -GAGCgGUUGCa-GCUGU-CG---GCGGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.