miRNA display CGI


Results 81 - 100 of 877 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6368 3' -59.3 NC_001847.1 + 120216 0.7 0.537595
Target:  5'- --aGCCAGCGgua--GGCCGUCGCGGc -3'
miRNA:   3'- gagCGGUUGCagcugUCGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 120108 0.68 0.645965
Target:  5'- -gCGCCcgcGCGUCGGCgacucaAGCCauuGCCGCGa -3'
miRNA:   3'- gaGCGGu--UGCAGCUG------UCGG---CGGCGCc -5'
6368 3' -59.3 NC_001847.1 + 120106 0.73 0.410409
Target:  5'- gCUCGCaCAGC-UCGccCGGCgGCCGCGGc -3'
miRNA:   3'- -GAGCG-GUUGcAGCu-GUCGgCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 119895 0.69 0.576574
Target:  5'- aUCGCguGCGU-GGCcGCCGCCGCc- -3'
miRNA:   3'- gAGCGguUGCAgCUGuCGGCGGCGcc -5'
6368 3' -59.3 NC_001847.1 + 119861 0.66 0.780394
Target:  5'- --gGUCAGCGUCGggaucggcauuGCGGCUGCgGCGn -3'
miRNA:   3'- gagCGGUUGCAGC-----------UGUCGGCGgCGCc -5'
6368 3' -59.3 NC_001847.1 + 119730 0.68 0.655894
Target:  5'- gCUCGCCGugccGCGcUCcAgGGCCGCCcagugGCGGa -3'
miRNA:   3'- -GAGCGGU----UGC-AGcUgUCGGCGG-----CGCC- -5'
6368 3' -59.3 NC_001847.1 + 119588 0.69 0.616145
Target:  5'- --gGCC-GCGgccCGACGGCCGCgCGCGc -3'
miRNA:   3'- gagCGGuUGCa--GCUGUCGGCG-GCGCc -5'
6368 3' -59.3 NC_001847.1 + 119267 0.66 0.771335
Target:  5'- gCUCGUCGGCGcugUCGG-AGCUGCCGUc- -3'
miRNA:   3'- -GAGCGGUUGC---AGCUgUCGGCGGCGcc -5'
6368 3' -59.3 NC_001847.1 + 119207 0.77 0.214372
Target:  5'- gCUCGUCGGCGcCG-CGGCCaCCGCGGg -3'
miRNA:   3'- -GAGCGGUUGCaGCuGUCGGcGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 119147 0.88 0.044156
Target:  5'- gCUCGUCGGCGcCG-CGGCCGCCGCGGg -3'
miRNA:   3'- -GAGCGGUUGCaGCuGUCGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 119082 0.77 0.240759
Target:  5'- -gCGCCcagcagaGGCGcCG-CGGCCGCCGCGGg -3'
miRNA:   3'- gaGCGG-------UUGCaGCuGUCGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 118983 0.69 0.576574
Target:  5'- --gGCCAACGg-GGCGGUCGCCcCGGc -3'
miRNA:   3'- gagCGGUUGCagCUGUCGGCGGcGCC- -5'
6368 3' -59.3 NC_001847.1 + 118812 0.67 0.70414
Target:  5'- gCUCGCCGuuGCG--GugAGCuugccuacacccgCGCCGCGGg -3'
miRNA:   3'- -GAGCGGU--UGCagCugUCG-------------GCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 118780 0.68 0.655894
Target:  5'- -gUGUgAGCGgcacCGGCAGCCGCCaGCGc -3'
miRNA:   3'- gaGCGgUUGCa---GCUGUCGGCGG-CGCc -5'
6368 3' -59.3 NC_001847.1 + 118402 0.8 0.141349
Target:  5'- cCUCGUCAGCGUCGugGccGUCGCCuGCGGu -3'
miRNA:   3'- -GAGCGGUUGCAGCugU--CGGCGG-CGCC- -5'
6368 3' -59.3 NC_001847.1 + 117525 0.66 0.768595
Target:  5'- -aCGCgCGGCGaCGACgaGGCCGugcgcaaccccuuuCCGCGGg -3'
miRNA:   3'- gaGCG-GUUGCaGCUG--UCGGC--------------GGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 116958 0.66 0.780394
Target:  5'- cCUCGCCGcGCGUCcGCcaugGGCCcGCUGgGGc -3'
miRNA:   3'- -GAGCGGU-UGCAGcUG----UCGG-CGGCgCC- -5'
6368 3' -59.3 NC_001847.1 + 116784 0.75 0.296887
Target:  5'- -gCGCCGACGaaugaaCGGCuGCCGCCGaCGGu -3'
miRNA:   3'- gaGCGGUUGCa-----GCUGuCGGCGGC-GCC- -5'
6368 3' -59.3 NC_001847.1 + 116730 0.71 0.490242
Target:  5'- -cCGCgcGCGcuguUCGACAGCC-CCGCGGg -3'
miRNA:   3'- gaGCGguUGC----AGCUGUCGGcGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 116641 0.67 0.734964
Target:  5'- aCUCGCCAgagcugcuggcgcgcGCGcgcuaCGACuGCCGCacggacguguggagCGCGGg -3'
miRNA:   3'- -GAGCGGU---------------UGCa----GCUGuCGGCG--------------GCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.