miRNA display CGI


Results 81 - 100 of 877 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6368 3' -59.3 NC_001847.1 + 53012 0.74 0.346622
Target:  5'- --aGCCGACaG-CGGCGGCCGCUGCGc -3'
miRNA:   3'- gagCGGUUG-CaGCUGUCGGCGGCGCc -5'
6368 3' -59.3 NC_001847.1 + 32130 0.74 0.354196
Target:  5'- -cCGCCGGCGcUgGGC-GCCGCCGCGc -3'
miRNA:   3'- gaGCGGUUGC-AgCUGuCGGCGGCGCc -5'
6368 3' -59.3 NC_001847.1 + 3350 0.74 0.361886
Target:  5'- -aUGCCGACGcUGcCGGCCGCCGCa- -3'
miRNA:   3'- gaGCGGUUGCaGCuGUCGGCGGCGcc -5'
6368 3' -59.3 NC_001847.1 + 105673 0.73 0.37761
Target:  5'- -gCGCCAGCGcccaggcCGACgcgcgGGCCGCCGCGc -3'
miRNA:   3'- gaGCGGUUGCa------GCUG-----UCGGCGGCGCc -5'
6368 3' -59.3 NC_001847.1 + 133876 0.73 0.37761
Target:  5'- -cCGCCAACcgcugggggcUCGGCGcGCCGCUGCGGc -3'
miRNA:   3'- gaGCGGUUGc---------AGCUGU-CGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 108711 0.73 0.410409
Target:  5'- cCUCGCgcGCGUuggucUGGCAGCCGCUagGCGGa -3'
miRNA:   3'- -GAGCGguUGCA-----GCUGUCGGCGG--CGCC- -5'
6368 3' -59.3 NC_001847.1 + 131188 0.73 0.410409
Target:  5'- cCUCGCCGcCGgaGACGGCgcccccccCGCCGCGGc -3'
miRNA:   3'- -GAGCGGUuGCagCUGUCG--------GCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 129917 0.75 0.296887
Target:  5'- uUUGCCGcgcGCGcccCGcCGGCCGCCGCGGc -3'
miRNA:   3'- gAGCGGU---UGCa--GCuGUCGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 52007 0.75 0.296887
Target:  5'- -gCGcCCGACGccgCGGCGGCCGCCGaGGa -3'
miRNA:   3'- gaGC-GGUUGCa--GCUGUCGGCGGCgCC- -5'
6368 3' -59.3 NC_001847.1 + 31411 0.75 0.283734
Target:  5'- uUCGUgGACGccgUCuGGCAGCCGCgGCGGa -3'
miRNA:   3'- gAGCGgUUGC---AG-CUGUCGGCGgCGCC- -5'
6368 3' -59.3 NC_001847.1 + 27727 0.72 0.444921
Target:  5'- -gCGUCAGCGgCGGaAGCCGCgGCGGc -3'
miRNA:   3'- gaGCGGUUGCaGCUgUCGGCGgCGCC- -5'
6368 3' -59.3 NC_001847.1 + 105579 0.72 0.444921
Target:  5'- -gCGCCGGCGcCGGCGcccCCGCCgGCGGc -3'
miRNA:   3'- gaGCGGUUGCaGCUGUc--GGCGG-CGCC- -5'
6368 3' -59.3 NC_001847.1 + 99242 0.72 0.444921
Target:  5'- -aUGCCGcuCGUUGucGCAGCCGgCGCGGg -3'
miRNA:   3'- gaGCGGUu-GCAGC--UGUCGGCgGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 34763 0.72 0.462776
Target:  5'- --aGCUGGCG-CGGCuGCgCGCCGCGGc -3'
miRNA:   3'- gagCGGUUGCaGCUGuCG-GCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 104507 0.71 0.470933
Target:  5'- uCUCGggguCCAcgGCGUCGAgcacgauCAGCCGCCGCc- -3'
miRNA:   3'- -GAGC----GGU--UGCAGCU-------GUCGGCGGCGcc -5'
6368 3' -59.3 NC_001847.1 + 69081 0.78 0.190043
Target:  5'- gCUCGCC-GCGUCuGGC-GCCGCgCGCGGa -3'
miRNA:   3'- -GAGCGGuUGCAG-CUGuCGGCG-GCGCC- -5'
6368 3' -59.3 NC_001847.1 + 4524 0.78 0.204334
Target:  5'- -gCGCaCGACGUgccucgCGGCGGCCGCcCGCGGg -3'
miRNA:   3'- gaGCG-GUUGCA------GCUGUCGGCG-GCGCC- -5'
6368 3' -59.3 NC_001847.1 + 54046 0.77 0.235717
Target:  5'- cCUCGUCGGCGcgCGGCgaGGCCGCCGCc- -3'
miRNA:   3'- -GAGCGGUUGCa-GCUG--UCGGCGGCGcc -5'
6368 3' -59.3 NC_001847.1 + 73704 0.76 0.247044
Target:  5'- cCUCGCC-GCGccCGGCGGCgCgGCCGCGGg -3'
miRNA:   3'- -GAGCGGuUGCa-GCUGUCG-G-CGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 2574 0.76 0.277332
Target:  5'- -gCGCgGGCGccugCG-CGGCCGCCGCGGc -3'
miRNA:   3'- gaGCGgUUGCa---GCuGUCGGCGGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.