Results 21 - 40 of 877 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6368 | 3' | -59.3 | NC_001847.1 | + | 103007 | 0.66 | 0.798128 |
Target: 5'- -gCGCgGGCG-CGGCGGCgcccagCGCCgGCGGc -3' miRNA: 3'- gaGCGgUUGCaGCUGUCG------GCGG-CGCC- -5' |
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6368 | 3' | -59.3 | NC_001847.1 | + | 122953 | 0.66 | 0.798128 |
Target: 5'- aUCGCUAucguaguCGUCGGCGcuGUCGCUGCu- -3' miRNA: 3'- gAGCGGUu------GCAGCUGU--CGGCGGCGcc -5' |
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6368 | 3' | -59.3 | NC_001847.1 | + | 129048 | 0.66 | 0.798128 |
Target: 5'- cCUCGCgGGCGUCu-CGcGCCuCCGCGa -3' miRNA: 3'- -GAGCGgUUGCAGcuGU-CGGcGGCGCc -5' |
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6368 | 3' | -59.3 | NC_001847.1 | + | 101319 | 0.66 | 0.798128 |
Target: 5'- -gCGCCcGCGUCugcgcACAGCCGCUccaGCGc -3' miRNA: 3'- gaGCGGuUGCAGc----UGUCGGCGG---CGCc -5' |
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6368 | 3' | -59.3 | NC_001847.1 | + | 75758 | 0.66 | 0.798128 |
Target: 5'- -cCGCCGGCuccguauuuuuuGcCGGCcGCCGCCGCu- -3' miRNA: 3'- gaGCGGUUG------------CaGCUGuCGGCGGCGcc -5' |
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6368 | 3' | -59.3 | NC_001847.1 | + | 52098 | 0.66 | 0.798128 |
Target: 5'- -gCGCC-GCGgcccaagCGcACuAGCgGCCGCGGg -3' miRNA: 3'- gaGCGGuUGCa------GC-UG-UCGgCGGCGCC- -5' |
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6368 | 3' | -59.3 | NC_001847.1 | + | 49579 | 0.66 | 0.798128 |
Target: 5'- uCUCgGCCGACGgCGGCgccuGGgCGCaGCGGg -3' miRNA: 3'- -GAG-CGGUUGCaGCUG----UCgGCGgCGCC- -5' |
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6368 | 3' | -59.3 | NC_001847.1 | + | 98137 | 0.66 | 0.798128 |
Target: 5'- -gCGUCAGC-UCGAgCGcGCCGCCGCc- -3' miRNA: 3'- gaGCGGUUGcAGCU-GU-CGGCGGCGcc -5' |
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6368 | 3' | -59.3 | NC_001847.1 | + | 92478 | 0.66 | 0.798128 |
Target: 5'- aUgGCCAGCG-CGGCGGCgGCCu--- -3' miRNA: 3'- gAgCGGUUGCaGCUGUCGgCGGcgcc -5' |
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6368 | 3' | -59.3 | NC_001847.1 | + | 2983 | 0.66 | 0.798128 |
Target: 5'- -cCGCCGGgGcCGGCgcuggAGCCGCgCGCGc -3' miRNA: 3'- gaGCGGUUgCaGCUG-----UCGGCG-GCGCc -5' |
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6368 | 3' | -59.3 | NC_001847.1 | + | 36189 | 0.66 | 0.798128 |
Target: 5'- -aCGCCGugGcgCGugGGCuCGCUgaagauauaagGCGGg -3' miRNA: 3'- gaGCGGUugCa-GCugUCG-GCGG-----------CGCC- -5' |
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6368 | 3' | -59.3 | NC_001847.1 | + | 38488 | 0.66 | 0.798128 |
Target: 5'- cCUCGagGACGUCGccggggggcggcGCGGUCGCCgGCGc -3' miRNA: 3'- -GAGCggUUGCAGC------------UGUCGGCGG-CGCc -5' |
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6368 | 3' | -59.3 | NC_001847.1 | + | 53826 | 0.66 | 0.797254 |
Target: 5'- -gCGCCGgaGCGggGGCgcugaagAGCCGgCGCGGg -3' miRNA: 3'- gaGCGGU--UGCagCUG-------UCGGCgGCGCC- -5' |
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6368 | 3' | -59.3 | NC_001847.1 | + | 88270 | 0.66 | 0.792864 |
Target: 5'- gCUCGCacGCGUCc-CGGCuuugcacuggccuugCGCCGCGGg -3' miRNA: 3'- -GAGCGguUGCAGcuGUCG---------------GCGGCGCC- -5' |
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6368 | 3' | -59.3 | NC_001847.1 | + | 81650 | 0.66 | 0.792864 |
Target: 5'- -cCGCCGACuUCGAgCAcgagcugcucgugacGCUGCuCGCGGg -3' miRNA: 3'- gaGCGGUUGcAGCU-GU---------------CGGCG-GCGCC- -5' |
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6368 | 3' | -59.3 | NC_001847.1 | + | 4301 | 0.66 | 0.792864 |
Target: 5'- cCUCGgcuUCGAUGgCGGCGGCUaugacggccgcuucgGCCGCGGc -3' miRNA: 3'- -GAGC---GGUUGCaGCUGUCGG---------------CGGCGCC- -5' |
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6368 | 3' | -59.3 | NC_001847.1 | + | 107114 | 0.66 | 0.792864 |
Target: 5'- cCUCGgcuUCGAUGgCGGCGGCUaugacggccgcuucgGCCGCGGc -3' miRNA: 3'- -GAGC---GGUUGCaGCUGUCGG---------------CGGCGCC- -5' |
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6368 | 3' | -59.3 | NC_001847.1 | + | 79757 | 0.66 | 0.791982 |
Target: 5'- -gCGCCAGCG-CGAUcagcggcaccagaAaccaggucuugccguGCCGCCGUGGu -3' miRNA: 3'- gaGCGGUUGCaGCUG-------------U---------------CGGCGGCGCC- -5' |
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6368 | 3' | -59.3 | NC_001847.1 | + | 67982 | 0.66 | 0.789328 |
Target: 5'- gUCGaCCGGCGgcuuggggCGGCcgguauuacGCCGCCGuCGGa -3' miRNA: 3'- gAGC-GGUUGCa-------GCUGu--------CGGCGGC-GCC- -5' |
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6368 | 3' | -59.3 | NC_001847.1 | + | 100092 | 0.66 | 0.789328 |
Target: 5'- --gGCgAACGUCaGCAGCCccGUCGCGa -3' miRNA: 3'- gagCGgUUGCAGcUGUCGG--CGGCGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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