Results 21 - 40 of 208 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6368 | 5' | -56.8 | NC_001847.1 | + | 11312 | 0.66 | 0.85268 |
Target: 5'- --gCGCGcCCGcCGAGGCcgGCGGGCGGc -3' miRNA: 3'- aagGCGC-GGCuGUUCUG--UGCCUGUCa -5' |
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6368 | 5' | -56.8 | NC_001847.1 | + | 26446 | 0.66 | 0.85268 |
Target: 5'- --aCGCGC--GCGAGGCAgGGGCGGg -3' miRNA: 3'- aagGCGCGgcUGUUCUGUgCCUGUCa -5' |
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6368 | 5' | -56.8 | NC_001847.1 | + | 95552 | 0.66 | 0.85268 |
Target: 5'- -gCCGCGCCGcaGCAGcGCugGGGCc-- -3' miRNA: 3'- aaGGCGCGGC--UGUUcUGugCCUGuca -5' |
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6368 | 5' | -56.8 | NC_001847.1 | + | 96182 | 0.66 | 0.85268 |
Target: 5'- aUCgGgGCCGGCAGcGGCAauGGCGGg -3' miRNA: 3'- aAGgCgCGGCUGUU-CUGUgcCUGUCa -5' |
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6368 | 5' | -56.8 | NC_001847.1 | + | 108762 | 0.66 | 0.85268 |
Target: 5'- -gCCGCGCUgGGCGccGGACGCgccGGGCGGc -3' miRNA: 3'- aaGGCGCGG-CUGU--UCUGUG---CCUGUCa -5' |
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6368 | 5' | -56.8 | NC_001847.1 | + | 71914 | 0.66 | 0.851887 |
Target: 5'- gUgCGCGCCGuccagguagauacGCAcGACGCGGAgAGc -3' miRNA: 3'- aAgGCGCGGC-------------UGUuCUGUGCCUgUCa -5' |
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6368 | 5' | -56.8 | NC_001847.1 | + | 103450 | 0.66 | 0.844656 |
Target: 5'- -cUCGCGCCGuACAgcgcAGACACGGcCGc- -3' miRNA: 3'- aaGGCGCGGC-UGU----UCUGUGCCuGUca -5' |
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6368 | 5' | -56.8 | NC_001847.1 | + | 29043 | 0.66 | 0.844656 |
Target: 5'- --gCGCGCCGGC-AGACgugcugcagGCGGugGGc -3' miRNA: 3'- aagGCGCGGCUGuUCUG---------UGCCugUCa -5' |
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6368 | 5' | -56.8 | NC_001847.1 | + | 88802 | 0.66 | 0.844656 |
Target: 5'- -cCCGaugcCGCCGACGcGGCccGCGGGCGGc -3' miRNA: 3'- aaGGC----GCGGCUGUuCUG--UGCCUGUCa -5' |
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6368 | 5' | -56.8 | NC_001847.1 | + | 70449 | 0.66 | 0.844656 |
Target: 5'- -gCCGCGCCuGACGcacugcGACACGcGCGGg -3' miRNA: 3'- aaGGCGCGG-CUGUu-----CUGUGCcUGUCa -5' |
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6368 | 5' | -56.8 | NC_001847.1 | + | 100891 | 0.66 | 0.844656 |
Target: 5'- --gCGCgGCCGGCGGGAgACGGGguCGGg -3' miRNA: 3'- aagGCG-CGGCUGUUCUgUGCCU--GUCa -5' |
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6368 | 5' | -56.8 | NC_001847.1 | + | 57499 | 0.66 | 0.844656 |
Target: 5'- -cCCGCGUCGA--AGGCcuccACGGGCGGc -3' miRNA: 3'- aaGGCGCGGCUguUCUG----UGCCUGUCa -5' |
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6368 | 5' | -56.8 | NC_001847.1 | + | 79542 | 0.66 | 0.844656 |
Target: 5'- gUCgGgGCCGGgGGGGCugGGGCu-- -3' miRNA: 3'- aAGgCgCGGCUgUUCUGugCCUGuca -5' |
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6368 | 5' | -56.8 | NC_001847.1 | + | 73754 | 0.66 | 0.844656 |
Target: 5'- gUUCCaaGCGCCgGGCGGcGGCGCGGGCc-- -3' miRNA: 3'- -AAGG--CGCGG-CUGUU-CUGUGCCUGuca -5' |
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6368 | 5' | -56.8 | NC_001847.1 | + | 100735 | 0.66 | 0.844656 |
Target: 5'- cUUCUGCGCCGAgcucuCGGGGC-CGGGgucCAGg -3' miRNA: 3'- -AAGGCGCGGCU-----GUUCUGuGCCU---GUCa -5' |
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6368 | 5' | -56.8 | NC_001847.1 | + | 96577 | 0.66 | 0.844656 |
Target: 5'- cUCCGCGgcuCCGGCAgcAGGCGCuGcCAGUa -3' miRNA: 3'- aAGGCGC---GGCUGU--UCUGUGcCuGUCA- -5' |
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6368 | 5' | -56.8 | NC_001847.1 | + | 103802 | 0.66 | 0.844656 |
Target: 5'- cUUCCGcCGCCGGCGGcGGCACGcGCu-- -3' miRNA: 3'- -AAGGC-GCGGCUGUU-CUGUGCcUGuca -5' |
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6368 | 5' | -56.8 | NC_001847.1 | + | 119151 | 0.66 | 0.836435 |
Target: 5'- gUCgGCGCCGcggccgccGCGGGGCgGCgGGGCAGg -3' miRNA: 3'- aAGgCGCGGC--------UGUUCUG-UG-CCUGUCa -5' |
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6368 | 5' | -56.8 | NC_001847.1 | + | 4603 | 0.66 | 0.836435 |
Target: 5'- aUCCGCcacagcucgGCCaGCucGGCGCGGGCGGc -3' miRNA: 3'- aAGGCG---------CGGcUGuuCUGUGCCUGUCa -5' |
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6368 | 5' | -56.8 | NC_001847.1 | + | 68917 | 0.66 | 0.836435 |
Target: 5'- -gCCGCGCUGAgGuucGGCGCGG-CGGc -3' miRNA: 3'- aaGGCGCGGCUgUu--CUGUGCCuGUCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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