miRNA display CGI


Results 41 - 60 of 367 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6369 3' -54.5 NC_001847.1 + 42485 0.66 0.93916
Target:  5'- gGCGGCGCGcCGaAGCGcUGCGGGcGAAa- -3'
miRNA:   3'- -CGUCGCGU-GC-UUGCaGCGCUC-CUUga -5'
6369 3' -54.5 NC_001847.1 + 94506 0.66 0.93916
Target:  5'- -aGGCGCgGCGGACGUgggggaaaGgGAGGGACc -3'
miRNA:   3'- cgUCGCG-UGCUUGCAg-------CgCUCCUUGa -5'
6369 3' -54.5 NC_001847.1 + 118473 0.66 0.93916
Target:  5'- uGCGGCGCAaggccCGGGCGcgccuguaggCGCGGGGccccGACg -3'
miRNA:   3'- -CGUCGCGU-----GCUUGCa---------GCGCUCC----UUGa -5'
6369 3' -54.5 NC_001847.1 + 22404 0.66 0.93916
Target:  5'- cGCGGCGaGCGugcuCGUCcGCG-GGGGCg -3'
miRNA:   3'- -CGUCGCgUGCuu--GCAG-CGCuCCUUGa -5'
6369 3' -54.5 NC_001847.1 + 29899 0.66 0.93916
Target:  5'- gGCGGCccuGC-CGGcCGcCGCGGGGGGCc -3'
miRNA:   3'- -CGUCG---CGuGCUuGCaGCGCUCCUUGa -5'
6369 3' -54.5 NC_001847.1 + 74532 0.66 0.93916
Target:  5'- cGCGGCGCuuGAgucaguuuaACGUCGCcAGcGACUa -3'
miRNA:   3'- -CGUCGCGugCU---------UGCAGCGcUCcUUGA- -5'
6369 3' -54.5 NC_001847.1 + 111094 0.66 0.93916
Target:  5'- gGCuGCGCGaGAAgGUCGCGcGGcACg -3'
miRNA:   3'- -CGuCGCGUgCUUgCAGCGCuCCuUGa -5'
6369 3' -54.5 NC_001847.1 + 62474 0.66 0.93916
Target:  5'- aGCAGgGCcggggucgccgGCGGGCGgcCGCGGGGuGGCg -3'
miRNA:   3'- -CGUCgCG-----------UGCUUGCa-GCGCUCC-UUGa -5'
6369 3' -54.5 NC_001847.1 + 89903 0.66 0.938679
Target:  5'- cGCGGCGCcCGAGguugugcCG-CGCGAGGccGCg -3'
miRNA:   3'- -CGUCGCGuGCUU-------GCaGCGCUCCu-UGa -5'
6369 3' -54.5 NC_001847.1 + 98601 0.66 0.938679
Target:  5'- cCGGCGCuuGGGCGgCGCGgcaccccgcaagcGGGGACa -3'
miRNA:   3'- cGUCGCGugCUUGCaGCGC-------------UCCUUGa -5'
6369 3' -54.5 NC_001847.1 + 74312 0.66 0.937711
Target:  5'- cGCAGCGcCGCGGGCGccccUCGCGccaucagugugucuGGcGGGCg -3'
miRNA:   3'- -CGUCGC-GUGCUUGC----AGCGC--------------UC-CUUGa -5'
6369 3' -54.5 NC_001847.1 + 32335 0.66 0.93624
Target:  5'- cGCGGCGCggcGCGGAgGgggcccagcccccgCGCGGGGGGg- -3'
miRNA:   3'- -CGUCGCG---UGCUUgCa-------------GCGCUCCUUga -5'
6369 3' -54.5 NC_001847.1 + 27078 0.66 0.934245
Target:  5'- gGCGGCaccgcgcccacGCugGAgGCGUCGcCGAGGucGCg -3'
miRNA:   3'- -CGUCG-----------CGugCU-UGCAGC-GCUCCu-UGa -5'
6369 3' -54.5 NC_001847.1 + 77700 0.66 0.934245
Target:  5'- gGCGGCGUGCGcGCG-CGCGcuGGuGCg -3'
miRNA:   3'- -CGUCGCGUGCuUGCaGCGCu-CCuUGa -5'
6369 3' -54.5 NC_001847.1 + 114334 0.66 0.934245
Target:  5'- aGCucGCGCugGAaaGCGUCG--GGGAGCc -3'
miRNA:   3'- -CGu-CGCGugCU--UGCAGCgcUCCUUGa -5'
6369 3' -54.5 NC_001847.1 + 117407 0.66 0.934245
Target:  5'- cGguGCGCGCGGugGacgcuUCGCGcGGcuGCg -3'
miRNA:   3'- -CguCGCGUGCUugC-----AGCGCuCCu-UGa -5'
6369 3' -54.5 NC_001847.1 + 86479 0.66 0.934245
Target:  5'- aCGGCgGCACGGACGacgaggcUGCGGGGGcgGCg -3'
miRNA:   3'- cGUCG-CGUGCUUGCa------GCGCUCCU--UGa -5'
6369 3' -54.5 NC_001847.1 + 2070 0.66 0.934245
Target:  5'- cGCAGCGguggcgGCGAGCGcccCGCGGGGcccGCg -3'
miRNA:   3'- -CGUCGCg-----UGCUUGCa--GCGCUCCu--UGa -5'
6369 3' -54.5 NC_001847.1 + 50551 0.66 0.934245
Target:  5'- aGCGGCGCugcuggaccGCG-GCGUCGCcucugacgacGAGGAGg- -3'
miRNA:   3'- -CGUCGCG---------UGCuUGCAGCG----------CUCCUUga -5'
6369 3' -54.5 NC_001847.1 + 15310 0.66 0.934245
Target:  5'- aCGGCGUcgggggccGCGGGCGUaGCGGGGGcggGCg -3'
miRNA:   3'- cGUCGCG--------UGCUUGCAgCGCUCCU---UGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.