Results 61 - 80 of 506 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6369 | 5' | -60.7 | NC_001847.1 | + | 114168 | 0.66 | 0.689054 |
Target: 5'- gGAGgCCUAGUGcgcGCGCCcGCuuauagGCGUCGa -3' miRNA: 3'- aCUCgGGGUCGC---UGCGGuCG------UGCAGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 102095 | 0.66 | 0.689054 |
Target: 5'- aGcGCCUCGGC--CGCgAGCGCGUCc -3' miRNA: 3'- aCuCGGGGUCGcuGCGgUCGUGCAGc -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 90885 | 0.66 | 0.679155 |
Target: 5'- gGGGCCguugcCCAGU--CGCCGGCGCGcUCa -3' miRNA: 3'- aCUCGG-----GGUCGcuGCGGUCGUGC-AGc -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 73237 | 0.66 | 0.679155 |
Target: 5'- gGGGC---GGCGGCGCgGGCGCGcUCGa -3' miRNA: 3'- aCUCGgggUCGCUGCGgUCGUGC-AGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 48631 | 0.66 | 0.679155 |
Target: 5'- nGGGCgCCCAGC--CGCC-GCGCGaCGg -3' miRNA: 3'- aCUCG-GGGUCGcuGCGGuCGUGCaGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 28178 | 0.66 | 0.679155 |
Target: 5'- cGGGCCCgaggacugCAGCGAUGCCGGgCcCGagGa -3' miRNA: 3'- aCUCGGG--------GUCGCUGCGGUC-GuGCagC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 986 | 0.66 | 0.679155 |
Target: 5'- gGGGCuUCCGccGCGGCGgCGGCACG-CGc -3' miRNA: 3'- aCUCG-GGGU--CGCUGCgGUCGUGCaGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 273 | 0.66 | 0.679155 |
Target: 5'- cGAGCCCgGGgGcCGCCGagcccGCGCGggCGc -3' miRNA: 3'- aCUCGGGgUCgCuGCGGU-----CGUGCa-GC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 71848 | 0.66 | 0.678163 |
Target: 5'- aGAGCacgccucCCCAGCGGuggaagcggcCGCgAGCGCG-CGg -3' miRNA: 3'- aCUCG-------GGGUCGCU----------GCGgUCGUGCaGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 133245 | 0.66 | 0.676178 |
Target: 5'- --uGCCCCGcaucguacauguucGUGAUGUUGGCGCGUCu -3' miRNA: 3'- acuCGGGGU--------------CGCUGCGGUCGUGCAGc -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 57418 | 0.66 | 0.679155 |
Target: 5'- cGGGCCUCGcacGCG-CGCCAaGCGCG-Ca -3' miRNA: 3'- aCUCGGGGU---CGCuGCGGU-CGUGCaGc -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 127374 | 0.66 | 0.679155 |
Target: 5'- cGAGCCUCGGC-ACcaaCGGC-CGUCGg -3' miRNA: 3'- aCUCGGGGUCGcUGcg-GUCGuGCAGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 98504 | 0.66 | 0.689054 |
Target: 5'- cGAGCa-CAGCGccacaGCCAGCuuGUCGc -3' miRNA: 3'- aCUCGggGUCGCug---CGGUCGugCAGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 32327 | 0.66 | 0.689054 |
Target: 5'- gGGGCCCgC-GCGGCGC-GGCGCGg-- -3' miRNA: 3'- aCUCGGG-GuCGCUGCGgUCGUGCagc -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 31282 | 0.66 | 0.689054 |
Target: 5'- aGGGCCCgCGGgaGACGCUcgugcugcugcGGCGCGcCGc -3' miRNA: 3'- aCUCGGG-GUCg-CUGCGG-----------UCGUGCaGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 12014 | 0.66 | 0.689054 |
Target: 5'- -uGGCUCUGG-GGCGCCGGCGagGUCGu -3' miRNA: 3'- acUCGGGGUCgCUGCGGUCGUg-CAGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 120961 | 0.66 | 0.689054 |
Target: 5'- gUGGGCggaCCCAGCGcCGCguaAGCGCGg-- -3' miRNA: 3'- -ACUCG---GGGUCGCuGCGg--UCGUGCagc -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 97431 | 0.66 | 0.686089 |
Target: 5'- cGGcGCgCCCAGCagcagcgcgcacguGACGagguCCAGCGCGUUGa -3' miRNA: 3'- aCU-CG-GGGUCG--------------CUGC----GGUCGUGCAGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 375 | 0.66 | 0.679155 |
Target: 5'- --cGCCCC-GCG-CGCC-GCGCGcCGg -3' miRNA: 3'- acuCGGGGuCGCuGCGGuCGUGCaGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 80558 | 0.66 | 0.679155 |
Target: 5'- cGcGCCgCCAGCGcCGCCcagcccgcggGGC-CGUCGu -3' miRNA: 3'- aCuCGG-GGUCGCuGCGG----------UCGuGCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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