miRNA display CGI


Results 81 - 100 of 506 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6369 5' -60.7 NC_001847.1 + 118782 0.66 0.669219
Target:  5'- gUGAGCggcaCCGGCaGcCGCCAGCGCcUCc -3'
miRNA:   3'- -ACUCGg---GGUCG-CuGCGGUCGUGcAGc -5'
6369 5' -60.7 NC_001847.1 + 104789 0.66 0.669219
Target:  5'- aGGGCCcgCCAGCaACGCgCGGUgcuCGUCGu -3'
miRNA:   3'- aCUCGG--GGUCGcUGCG-GUCGu--GCAGC- -5'
6369 5' -60.7 NC_001847.1 + 51961 0.66 0.659255
Target:  5'- cGcGCCCCccgcCGucCGCCAGCcCGUCGg -3'
miRNA:   3'- aCuCGGGGuc--GCu-GCGGUCGuGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 44189 0.66 0.659255
Target:  5'- -cAGCCCCuuCGAgaGCCAGCugGUg- -3'
miRNA:   3'- acUCGGGGucGCUg-CGGUCGugCAgc -5'
6369 5' -60.7 NC_001847.1 + 34366 0.66 0.659255
Target:  5'- aGAGaaggCCAGCGAgCGCCAugGCGCGgggCGa -3'
miRNA:   3'- aCUCgg--GGUCGCU-GCGGU--CGUGCa--GC- -5'
6369 5' -60.7 NC_001847.1 + 897 0.66 0.659255
Target:  5'- gGGGCCgCC-GCGGcCGCCGGC-CGcCGc -3'
miRNA:   3'- aCUCGG-GGuCGCU-GCGGUCGuGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 2919 0.66 0.659255
Target:  5'- gGGGCCacgguCC-GCGcCGCCAGCGCGg-- -3'
miRNA:   3'- aCUCGG-----GGuCGCuGCGGUCGUGCagc -5'
6369 5' -60.7 NC_001847.1 + 133245 0.66 0.676178
Target:  5'- --uGCCCCGcaucguacauguucGUGAUGUUGGCGCGUCu -3'
miRNA:   3'- acuCGGGGU--------------CGCUGCGGUCGUGCAGc -5'
6369 5' -60.7 NC_001847.1 + 71848 0.66 0.678163
Target:  5'- aGAGCacgccucCCCAGCGGuggaagcggcCGCgAGCGCG-CGg -3'
miRNA:   3'- aCUCG-------GGGUCGCU----------GCGgUCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 273 0.66 0.679155
Target:  5'- cGAGCCCgGGgGcCGCCGagcccGCGCGggCGc -3'
miRNA:   3'- aCUCGGGgUCgCuGCGGU-----CGUGCa-GC- -5'
6369 5' -60.7 NC_001847.1 + 97431 0.66 0.686089
Target:  5'- cGGcGCgCCCAGCagcagcgcgcacguGACGagguCCAGCGCGUUGa -3'
miRNA:   3'- aCU-CG-GGGUCG--------------CUGC----GGUCGUGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 375 0.66 0.679155
Target:  5'- --cGCCCC-GCG-CGCC-GCGCGcCGg -3'
miRNA:   3'- acuCGGGGuCGCuGCGGuCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 80558 0.66 0.679155
Target:  5'- cGcGCCgCCAGCGcCGCCcagcccgcggGGC-CGUCGu -3'
miRNA:   3'- aCuCGG-GGUCGCuGCGG----------UCGuGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 127374 0.66 0.679155
Target:  5'- cGAGCCUCGGC-ACcaaCGGC-CGUCGg -3'
miRNA:   3'- aCUCGGGGUCGcUGcg-GUCGuGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 57418 0.66 0.679155
Target:  5'- cGGGCCUCGcacGCG-CGCCAaGCGCG-Ca -3'
miRNA:   3'- aCUCGGGGU---CGCuGCGGU-CGUGCaGc -5'
6369 5' -60.7 NC_001847.1 + 90885 0.66 0.679155
Target:  5'- gGGGCCguugcCCAGU--CGCCGGCGCGcUCa -3'
miRNA:   3'- aCUCGG-----GGUCGcuGCGGUCGUGC-AGc -5'
6369 5' -60.7 NC_001847.1 + 73237 0.66 0.679155
Target:  5'- gGGGC---GGCGGCGCgGGCGCGcUCGa -3'
miRNA:   3'- aCUCGgggUCGCUGCGgUCGUGC-AGC- -5'
6369 5' -60.7 NC_001847.1 + 48631 0.66 0.679155
Target:  5'- nGGGCgCCCAGC--CGCC-GCGCGaCGg -3'
miRNA:   3'- aCUCG-GGGUCGcuGCGGuCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 28178 0.66 0.679155
Target:  5'- cGGGCCCgaggacugCAGCGAUGCCGGgCcCGagGa -3'
miRNA:   3'- aCUCGGG--------GUCGCUGCGGUC-GuGCagC- -5'
6369 5' -60.7 NC_001847.1 + 986 0.66 0.679155
Target:  5'- gGGGCuUCCGccGCGGCGgCGGCACG-CGc -3'
miRNA:   3'- aCUCG-GGGU--CGCUGCgGUCGUGCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.