miRNA display CGI


Results 101 - 120 of 506 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6369 5' -60.7 NC_001847.1 + 10213 0.66 0.649269
Target:  5'- cGGGCCCagGGCG-CGCCcGC-UGUCGc -3'
miRNA:   3'- aCUCGGGg-UCGCuGCGGuCGuGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 8595 0.66 0.649269
Target:  5'- -aGGCCCCgccaggGGCGGCGCuCGGC-CGggggCGg -3'
miRNA:   3'- acUCGGGG------UCGCUGCG-GUCGuGCa---GC- -5'
6369 5' -60.7 NC_001847.1 + 51961 0.66 0.659255
Target:  5'- cGcGCCCCccgcCGucCGCCAGCcCGUCGg -3'
miRNA:   3'- aCuCGGGGuc--GCu-GCGGUCGuGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 104789 0.66 0.669219
Target:  5'- aGGGCCcgCCAGCaACGCgCGGUgcuCGUCGu -3'
miRNA:   3'- aCUCGG--GGUCGcUGCG-GUCGu--GCAGC- -5'
6369 5' -60.7 NC_001847.1 + 90885 0.66 0.679155
Target:  5'- gGGGCCguugcCCAGU--CGCCGGCGCGcUCa -3'
miRNA:   3'- aCUCGG-----GGUCGcuGCGGUCGUGC-AGc -5'
6369 5' -60.7 NC_001847.1 + 73237 0.66 0.679155
Target:  5'- gGGGC---GGCGGCGCgGGCGCGcUCGa -3'
miRNA:   3'- aCUCGgggUCGCUGCGgUCGUGC-AGC- -5'
6369 5' -60.7 NC_001847.1 + 48631 0.66 0.679155
Target:  5'- nGGGCgCCCAGC--CGCC-GCGCGaCGg -3'
miRNA:   3'- aCUCG-GGGUCGcuGCGGuCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 28178 0.66 0.679155
Target:  5'- cGGGCCCgaggacugCAGCGAUGCCGGgCcCGagGa -3'
miRNA:   3'- aCUCGGG--------GUCGCUGCGGUC-GuGCagC- -5'
6369 5' -60.7 NC_001847.1 + 986 0.66 0.679155
Target:  5'- gGGGCuUCCGccGCGGCGgCGGCACG-CGc -3'
miRNA:   3'- aCUCG-GGGU--CGCUGCgGUCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 273 0.66 0.679155
Target:  5'- cGAGCCCgGGgGcCGCCGagcccGCGCGggCGc -3'
miRNA:   3'- aCUCGGGgUCgCuGCGGU-----CGUGCa-GC- -5'
6369 5' -60.7 NC_001847.1 + 71848 0.66 0.678163
Target:  5'- aGAGCacgccucCCCAGCGGuggaagcggcCGCgAGCGCG-CGg -3'
miRNA:   3'- aCUCG-------GGGUCGCU----------GCGgUCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 118782 0.66 0.669219
Target:  5'- gUGAGCggcaCCGGCaGcCGCCAGCGCcUCc -3'
miRNA:   3'- -ACUCGg---GGUCG-CuGCGGUCGUGcAGc -5'
6369 5' -60.7 NC_001847.1 + 131286 0.66 0.649269
Target:  5'- cGcAGCCCCGGCGcCGUC--UACGUCu -3'
miRNA:   3'- aC-UCGGGGUCGCuGCGGucGUGCAGc -5'
6369 5' -60.7 NC_001847.1 + 8438 0.66 0.669219
Target:  5'- cGGGUCggaGGCGGCGCCGGguCGgaggCGg -3'
miRNA:   3'- aCUCGGgg-UCGCUGCGGUCguGCa---GC- -5'
6369 5' -60.7 NC_001847.1 + 51514 0.66 0.669219
Target:  5'- --cGCgCCGguGCGGCGCCGGCAgG-CGg -3'
miRNA:   3'- acuCGgGGU--CGCUGCGGUCGUgCaGC- -5'
6369 5' -60.7 NC_001847.1 + 38767 0.66 0.676178
Target:  5'- cGGGCCCguGCuGGagcacgagcgucccUGCCggcAGCGCGUCGc -3'
miRNA:   3'- aCUCGGGguCG-CU--------------GCGG---UCGUGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 133245 0.66 0.676178
Target:  5'- --uGCCCCGcaucguacauguucGUGAUGUUGGCGCGUCu -3'
miRNA:   3'- acuCGGGGU--------------CGCUGCGGUCGUGCAGc -5'
6369 5' -60.7 NC_001847.1 + 107357 0.67 0.589344
Target:  5'- -uGGCCCCcGCGuCuCCGGCGcCGUCGu -3'
miRNA:   3'- acUCGGGGuCGCuGcGGUCGU-GCAGC- -5'
6369 5' -60.7 NC_001847.1 + 86489 0.67 0.589344
Target:  5'- cGGGCUUcuugCAGCGGCGCU-GCAcCGUCGc -3'
miRNA:   3'- aCUCGGG----GUCGCUGCGGuCGU-GCAGC- -5'
6369 5' -60.7 NC_001847.1 + 123456 0.67 0.639271
Target:  5'- cGGGCuuggCCCGGCGACGgCCGcCGCGggcUCGg -3'
miRNA:   3'- aCUCG----GGGUCGCUGC-GGUcGUGC---AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.