miRNA display CGI


Results 21 - 40 of 506 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6369 5' -60.7 NC_001847.1 + 106678 0.77 0.159775
Target:  5'- cGGGCCcuCCAGCGGCGgCGGCcCGUCGc -3'
miRNA:   3'- aCUCGG--GGUCGCUGCgGUCGuGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 99523 0.77 0.176416
Target:  5'- -uGGCCCCAGCGcCGCCGGCgGCGgCGu -3'
miRNA:   3'- acUCGGGGUCGCuGCGGUCG-UGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 28390 0.76 0.204265
Target:  5'- cGGcGCCCCccccgccGCGGCGCCAGCGCGggCGc -3'
miRNA:   3'- aCU-CGGGGu------CGCUGCGGUCGUGCa-GC- -5'
6369 5' -60.7 NC_001847.1 + 131669 0.76 0.185303
Target:  5'- cGAGCuCUCGGCG-CGCCGGCGCG-CGc -3'
miRNA:   3'- aCUCG-GGGUCGCuGCGGUCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 16125 0.76 0.199373
Target:  5'- gUGcGCCCCAccuGCGggucugcgaucaGCGCCAGCAUGUCGc -3'
miRNA:   3'- -ACuCGGGGU---CGC------------UGCGGUCGUGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 134893 0.76 0.204265
Target:  5'- cGGGCCCCuG-GGCGCCGG-GCGUCGg -3'
miRNA:   3'- aCUCGGGGuCgCUGCGGUCgUGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 64485 0.76 0.189893
Target:  5'- -cAGCCCCAGCaGAUGCgCGGCcACGUCa -3'
miRNA:   3'- acUCGGGGUCG-CUGCG-GUCG-UGCAGc -5'
6369 5' -60.7 NC_001847.1 + 91554 0.76 0.199373
Target:  5'- -cGGCCCCAGCGccACGCUggggcGCGCGUCGc -3'
miRNA:   3'- acUCGGGGUCGC--UGCGGu----CGUGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 9725 0.76 0.180811
Target:  5'- cGGGuCCuCCGGCGGCGCCGGgGCaGUCGc -3'
miRNA:   3'- aCUC-GG-GGUCGCUGCGGUCgUG-CAGC- -5'
6369 5' -60.7 NC_001847.1 + 32080 0.76 0.204265
Target:  5'- cGGGCCCCuG-GGCGCCGG-GCGUCGg -3'
miRNA:   3'- aCUCGGGGuCgCUGCGGUCgUGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 81185 0.76 0.185303
Target:  5'- aGGGCUCgCGGCGGCGCCAGC-CGgcgCGc -3'
miRNA:   3'- aCUCGGG-GUCGCUGCGGUCGuGCa--GC- -5'
6369 5' -60.7 NC_001847.1 + 71606 0.76 0.204265
Target:  5'- -cGGCCCaGGCGGCGCCAGCAgCG-CGg -3'
miRNA:   3'- acUCGGGgUCGCUGCGGUCGU-GCaGC- -5'
6369 5' -60.7 NC_001847.1 + 56887 0.76 0.189893
Target:  5'- cGGGCCCgccggcgaCGGCGACGCCGGCGgG-CGg -3'
miRNA:   3'- aCUCGGG--------GUCGCUGCGGUCGUgCaGC- -5'
6369 5' -60.7 NC_001847.1 + 101161 0.76 0.180811
Target:  5'- cUGGGCCCagcccggcCAGCGcgcccgGCGCCAGCGCGcUCGg -3'
miRNA:   3'- -ACUCGGG--------GUCGC------UGCGGUCGUGC-AGC- -5'
6369 5' -60.7 NC_001847.1 + 131203 0.76 0.204265
Target:  5'- cGGcGCCCCccccgccGCGGCGCCAGCGCGggCGc -3'
miRNA:   3'- aCU-CGGGGu------CGCUGCGGUCGUGCa-GC- -5'
6369 5' -60.7 NC_001847.1 + 94163 0.75 0.230311
Target:  5'- gUGAGCgcggCCCGGCGcaaccugcuCGUCGGCACGUCGc -3'
miRNA:   3'- -ACUCG----GGGUCGCu--------GCGGUCGUGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 99301 0.75 0.214364
Target:  5'- gUGGcGCCUCAGCu-CGCgCAGCGCGUCGa -3'
miRNA:   3'- -ACU-CGGGGUCGcuGCG-GUCGUGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 82582 0.75 0.224887
Target:  5'- cGAGCUCCAGCucuCG-CAGCAUGUCGg -3'
miRNA:   3'- aCUCGGGGUCGcu-GCgGUCGUGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 98560 0.75 0.216434
Target:  5'- aGAGCggcgugccgucggcgUCCAgguaggcgcGCGGCGCCAGCGCGUCa -3'
miRNA:   3'- aCUCG---------------GGGU---------CGCUGCGGUCGUGCAGc -5'
6369 5' -60.7 NC_001847.1 + 93824 0.75 0.219572
Target:  5'- aGAGCUcgaaccggCCGGCGGCGCCGGaaACGUCGc -3'
miRNA:   3'- aCUCGG--------GGUCGCUGCGGUCg-UGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.