miRNA display CGI


Results 81 - 100 of 506 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6369 5' -60.7 NC_001847.1 + 44035 0.72 0.340069
Target:  5'- aGGGCUgCAGCGAgGC--GCGCGUCGg -3'
miRNA:   3'- aCUCGGgGUCGCUgCGguCGUGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 88694 0.72 0.347587
Target:  5'- aGuGCCCUGGCGGCGCU-GCGCG-CGc -3'
miRNA:   3'- aCuCGGGGUCGCUGCGGuCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 90623 0.72 0.340069
Target:  5'- cGAGCUCgCGGaCGGCgGCCAGCuCGUCa -3'
miRNA:   3'- aCUCGGG-GUC-GCUG-CGGUCGuGCAGc -5'
6369 5' -60.7 NC_001847.1 + 3711 0.72 0.332669
Target:  5'- cGGGCCCC-GCGGcCGCCgcguAGCGCG-CGg -3'
miRNA:   3'- aCUCGGGGuCGCU-GCGG----UCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 34045 0.72 0.318227
Target:  5'- aUGGGCCCC-GCGGCGC--GCGCGUUu -3'
miRNA:   3'- -ACUCGGGGuCGCUGCGguCGUGCAGc -5'
6369 5' -60.7 NC_001847.1 + 73433 0.72 0.325389
Target:  5'- cGAGCgCCCucuGGCGACGCgCGGCAUGg-- -3'
miRNA:   3'- aCUCG-GGG---UCGCUGCG-GUCGUGCagc -5'
6369 5' -60.7 NC_001847.1 + 1437 0.72 0.325389
Target:  5'- cGGGCCCaggcGCGugGCCAccguguagcGCACGUUGc -3'
miRNA:   3'- aCUCGGGgu--CGCugCGGU---------CGUGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 85227 0.72 0.318227
Target:  5'- aGAGCCCgacgaaggcggcCGGCGGCGCCAgGUGCG-CGa -3'
miRNA:   3'- aCUCGGG------------GUCGCUGCGGU-CGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 105718 0.72 0.332669
Target:  5'- --cGCCCCAGCGcuCGCUGGCGCG-Ca -3'
miRNA:   3'- acuCGGGGUCGCu-GCGGUCGUGCaGc -5'
6369 5' -60.7 NC_001847.1 + 33776 0.72 0.340069
Target:  5'- -cAGCCCCcGCGGCGCaAGCGCG-CGc -3'
miRNA:   3'- acUCGGGGuCGCUGCGgUCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 94594 0.72 0.331936
Target:  5'- gUGA-CUUCAGCGGCGCgcugccgCAGCACGUCGc -3'
miRNA:   3'- -ACUcGGGGUCGCUGCG-------GUCGUGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 100379 0.71 0.41106
Target:  5'- -cGGCCgCGGCGcgcagccGCGCCAGCucggccGCGUCGa -3'
miRNA:   3'- acUCGGgGUCGC-------UGCGGUCG------UGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 105000 0.71 0.378833
Target:  5'- aGGGCgCaCGGCG-CGCC-GCGCGUCGc -3'
miRNA:   3'- aCUCGgG-GUCGCuGCGGuCGUGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 69644 0.71 0.386118
Target:  5'- cGAGUCCCAGCcGCGCCgcgacccGGUACG-CGu -3'
miRNA:   3'- aCUCGGGGUCGcUGCGG-------UCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 56005 0.71 0.386933
Target:  5'- cGAGuCCCCcGCGACG--GGCACGUCc -3'
miRNA:   3'- aCUC-GGGGuCGCUGCggUCGUGCAGc -5'
6369 5' -60.7 NC_001847.1 + 97707 0.71 0.386933
Target:  5'- --cGUCCaCAGCGcCGCCAGCAaGUCGc -3'
miRNA:   3'- acuCGGG-GUCGCuGCGGUCGUgCAGC- -5'
6369 5' -60.7 NC_001847.1 + 2096 0.71 0.392671
Target:  5'- gGGGCCCgcgCGGCGGCgggccgcgaucucgGCCAGCGCcUCGg -3'
miRNA:   3'- aCUCGGG---GUCGCUG--------------CGGUCGUGcAGC- -5'
6369 5' -60.7 NC_001847.1 + 16647 0.71 0.395147
Target:  5'- --uGCUCUuggcgaacguGGCGGCGCgGGCGCGUCGc -3'
miRNA:   3'- acuCGGGG----------UCGCUGCGgUCGUGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 131921 0.71 0.370847
Target:  5'- -aAGCCgCGGCGGCGCggaGGCACGUgCGc -3'
miRNA:   3'- acUCGGgGUCGCUGCGg--UCGUGCA-GC- -5'
6369 5' -60.7 NC_001847.1 + 12497 0.71 0.370847
Target:  5'- -aAGCCCggaGGCcGCaGCCGGCGCGUCGu -3'
miRNA:   3'- acUCGGGg--UCGcUG-CGGUCGUGCAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.