miRNA display CGI


Results 41 - 60 of 506 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6369 5' -60.7 NC_001847.1 + 98560 0.75 0.216434
Target:  5'- aGAGCggcgugccgucggcgUCCAgguaggcgcGCGGCGCCAGCGCGUCa -3'
miRNA:   3'- aCUCG---------------GGGU---------CGCUGCGGUCGUGCAGc -5'
6369 5' -60.7 NC_001847.1 + 93824 0.75 0.219572
Target:  5'- aGAGCUcgaaccggCCGGCGGCGCCGGaaACGUCGc -3'
miRNA:   3'- aCUCGG--------GGUCGCUGCGGUCg-UGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 91731 0.75 0.219572
Target:  5'- cGAGgCCCAGCugcaGCGCCcugcGCGCGUCGg -3'
miRNA:   3'- aCUCgGGGUCGc---UGCGGu---CGUGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 48398 0.75 0.224887
Target:  5'- cGGGCCUCGGCGGCaaaGCgGGaCGCGUCGc -3'
miRNA:   3'- aCUCGGGGUCGCUG---CGgUC-GUGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 82582 0.75 0.224887
Target:  5'- cGAGCUCCAGCucuCG-CAGCAUGUCGg -3'
miRNA:   3'- aCUCGGGGUCGcu-GCgGUCGUGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 94163 0.75 0.230311
Target:  5'- gUGAGCgcggCCCGGCGcaaccugcuCGUCGGCACGUCGc -3'
miRNA:   3'- -ACUCG----GGGUCGCu--------GCGGUCGUGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 106280 0.75 0.230311
Target:  5'- --cGCCCCAGCGcCGCCGGCGuCG-CGc -3'
miRNA:   3'- acuCGGGGUCGCuGCGGUCGU-GCaGC- -5'
6369 5' -60.7 NC_001847.1 + 18792 0.75 0.235846
Target:  5'- cGAGCUCCgcggcggcGGCGcGCGCCAGCGCG-CGc -3'
miRNA:   3'- aCUCGGGG--------UCGC-UGCGGUCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 56089 0.74 0.241491
Target:  5'- -cGGCUCCGGCGcCGCguuaAGCGCGUCGa -3'
miRNA:   3'- acUCGGGGUCGCuGCGg---UCGUGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 83114 0.74 0.241491
Target:  5'- aUGAGCCCCuGGCGcgaGCGCUAGUGCG-CGc -3'
miRNA:   3'- -ACUCGGGG-UCGC---UGCGGUCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 13404 0.74 0.241491
Target:  5'- cGGGCCCUgggagaaagacgGGCG-CGCCAGCGCG-CGc -3'
miRNA:   3'- aCUCGGGG------------UCGCuGCGGUCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 77380 0.74 0.247249
Target:  5'- cGAGCaCCAGCagccccGugGCCAGCGCGcCGa -3'
miRNA:   3'- aCUCGgGGUCG------CugCGGUCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 117284 0.74 0.259105
Target:  5'- cGGGCgaCCCGGCGGCGCUGGCaACG-CGa -3'
miRNA:   3'- aCUCG--GGGUCGCUGCGGUCG-UGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 22133 0.74 0.259105
Target:  5'- cUGGGCCCggCGGCGGCGgCGGCGCG-Ca -3'
miRNA:   3'- -ACUCGGG--GUCGCUGCgGUCGUGCaGc -5'
6369 5' -60.7 NC_001847.1 + 81441 0.74 0.259105
Target:  5'- cGAGCCgCCGGCGGCGCgCucGCGCG-CGc -3'
miRNA:   3'- aCUCGG-GGUCGCUGCG-Gu-CGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 52603 0.74 0.259105
Target:  5'- cGAGCCCgCgGGCGGCGCCuuugacuucGGCGCGUgCGc -3'
miRNA:   3'- aCUCGGG-G-UCGCUGCGG---------UCGUGCA-GC- -5'
6369 5' -60.7 NC_001847.1 + 124946 0.74 0.259105
Target:  5'- cUGGGCCCggCGGCGGCGgCGGCGCG-Ca -3'
miRNA:   3'- -ACUCGGG--GUCGCUGCgGUCGUGCaGc -5'
6369 5' -60.7 NC_001847.1 + 60889 0.74 0.265205
Target:  5'- cGGGCCCCagcAGCGGCGgCAGCaggcauaccGCGUCc -3'
miRNA:   3'- aCUCGGGG---UCGCUGCgGUCG---------UGCAGc -5'
6369 5' -60.7 NC_001847.1 + 79735 0.74 0.270794
Target:  5'- uUGAuGCCCUugaacguGGCGAgCGCCAGCGCGaUCa -3'
miRNA:   3'- -ACU-CGGGG-------UCGCU-GCGGUCGUGC-AGc -5'
6369 5' -60.7 NC_001847.1 + 93709 0.74 0.270794
Target:  5'- aUGGGCCCCGGCGACucgcaucgcaccgGCCGGCugcuagaccGCG-CGg -3'
miRNA:   3'- -ACUCGGGGUCGCUG-------------CGGUCG---------UGCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.