miRNA display CGI


Results 61 - 80 of 506 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6369 5' -60.7 NC_001847.1 + 36990 0.74 0.271421
Target:  5'- cGGGCCCgCgccgAGCGGCGgCGGCGCGcUCGa -3'
miRNA:   3'- aCUCGGG-G----UCGCUGCgGUCGUGC-AGC- -5'
6369 5' -60.7 NC_001847.1 + 101688 0.74 0.271421
Target:  5'- cGAGCCaugcucgccuCCAGCGACGCCcGCgACGcCGa -3'
miRNA:   3'- aCUCGG----------GGUCGCUGCGGuCG-UGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 81152 0.74 0.27394
Target:  5'- aGAGCCaacGCGGCGCCGggcggaagacgugguGCGCGUCGa -3'
miRNA:   3'- aCUCGGgguCGCUGCGGU---------------CGUGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 78553 0.73 0.290771
Target:  5'- cGAGUCCCGGCGcUGCCGuuCGCGUCa -3'
miRNA:   3'- aCUCGGGGUCGCuGCGGUc-GUGCAGc -5'
6369 5' -60.7 NC_001847.1 + 1569 0.73 0.297457
Target:  5'- cGAgGCCagcaCGGCGcGCGCCAGCGCGcCGc -3'
miRNA:   3'- aCU-CGGg---GUCGC-UGCGGUCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 3060 0.73 0.297457
Target:  5'- cGcGCUCCGgguGCGcCGCCAGCGCGUCc -3'
miRNA:   3'- aCuCGGGGU---CGCuGCGGUCGUGCAGc -5'
6369 5' -60.7 NC_001847.1 + 104382 0.73 0.297457
Target:  5'- cGAgGCCagcaCGGCGcGCGCCAGCGCGcCGc -3'
miRNA:   3'- aCU-CGGg---GUCGC-UGCGGUCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 105873 0.73 0.297457
Target:  5'- cGcGCUCCGgguGCGcCGCCAGCGCGUCc -3'
miRNA:   3'- aCuCGGGGU---CGCuGCGGUCGUGCAGc -5'
6369 5' -60.7 NC_001847.1 + 105129 0.73 0.297457
Target:  5'- aUGGGCCCCAGC-ACGCgGGCGgGcagCGg -3'
miRNA:   3'- -ACUCGGGGUCGcUGCGgUCGUgCa--GC- -5'
6369 5' -60.7 NC_001847.1 + 2316 0.73 0.297457
Target:  5'- aUGGGCCCCAGC-ACGCgGGCGgGcagCGg -3'
miRNA:   3'- -ACUCGGGGUCGcUGCGgUCGUgCa--GC- -5'
6369 5' -60.7 NC_001847.1 + 127032 0.73 0.304261
Target:  5'- gGGGCCCC-GCGccuGCGCUGGCgccGCGUCGc -3'
miRNA:   3'- aCUCGGGGuCGC---UGCGGUCG---UGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 105557 0.73 0.311185
Target:  5'- -cGGCCCCcggcccggcgcGGCGGCGCCGGCGCcggCGc -3'
miRNA:   3'- acUCGGGG-----------UCGCUGCGGUCGUGca-GC- -5'
6369 5' -60.7 NC_001847.1 + 2744 0.73 0.311185
Target:  5'- -cGGCCCCcggcccggcgcGGCGGCGCCGGCGCcggCGc -3'
miRNA:   3'- acUCGGGG-----------UCGCUGCGGUCGUGca-GC- -5'
6369 5' -60.7 NC_001847.1 + 19623 0.73 0.311185
Target:  5'- cGGGCCCgGGgcgcCGGCGUCGGCGCG-CGg -3'
miRNA:   3'- aCUCGGGgUC----GCUGCGGUCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 39827 0.73 0.313987
Target:  5'- cGGGCCCgAGCGcuuccugcguggcgcGCGCCAGC-CGcCGg -3'
miRNA:   3'- aCUCGGGgUCGC---------------UGCGGUCGuGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 85227 0.72 0.318227
Target:  5'- aGAGCCCgacgaaggcggcCGGCGGCGCCAgGUGCG-CGa -3'
miRNA:   3'- aCUCGGG------------GUCGCUGCGGU-CGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 34045 0.72 0.318227
Target:  5'- aUGGGCCCC-GCGGCGC--GCGCGUUu -3'
miRNA:   3'- -ACUCGGGGuCGCUGCGguCGUGCAGc -5'
6369 5' -60.7 NC_001847.1 + 73433 0.72 0.325389
Target:  5'- cGAGCgCCCucuGGCGACGCgCGGCAUGg-- -3'
miRNA:   3'- aCUCG-GGG---UCGCUGCG-GUCGUGCagc -5'
6369 5' -60.7 NC_001847.1 + 53010 0.72 0.325389
Target:  5'- gGAGCCgaCAGCGGCgGCCGcuGCGCGcUCGg -3'
miRNA:   3'- aCUCGGg-GUCGCUG-CGGU--CGUGC-AGC- -5'
6369 5' -60.7 NC_001847.1 + 1437 0.72 0.325389
Target:  5'- cGGGCCCaggcGCGugGCCAccguguagcGCACGUUGc -3'
miRNA:   3'- aCUCGGGgu--CGCugCGGU---------CGUGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.