miRNA display CGI


Results 81 - 100 of 506 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6369 5' -60.7 NC_001847.1 + 1437 0.72 0.325389
Target:  5'- cGGGCCCaggcGCGugGCCAccguguagcGCACGUUGc -3'
miRNA:   3'- aCUCGGGgu--CGCugCGGU---------CGUGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 25202 0.72 0.330473
Target:  5'- cGAGCCCCGcGCG-CgGCCGGCaaagagcaugaucgGCGUCGc -3'
miRNA:   3'- aCUCGGGGU-CGCuG-CGGUCG--------------UGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 94594 0.72 0.331936
Target:  5'- gUGA-CUUCAGCGGCGCgcugccgCAGCACGUCGc -3'
miRNA:   3'- -ACUcGGGGUCGCUGCG-------GUCGUGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 105718 0.72 0.332669
Target:  5'- --cGCCCCAGCGcuCGCUGGCGCG-Ca -3'
miRNA:   3'- acuCGGGGUCGCu-GCGGUCGUGCaGc -5'
6369 5' -60.7 NC_001847.1 + 3711 0.72 0.332669
Target:  5'- cGGGCCCC-GCGGcCGCCgcguAGCGCG-CGg -3'
miRNA:   3'- aCUCGGGGuCGCU-GCGG----UCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 106524 0.72 0.332669
Target:  5'- cGGGCCCC-GCGGcCGCCgcguAGCGCG-CGg -3'
miRNA:   3'- aCUCGGGGuCGCU-GCGG----UCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 44035 0.72 0.340069
Target:  5'- aGGGCUgCAGCGAgGC--GCGCGUCGg -3'
miRNA:   3'- aCUCGGgGUCGCUgCGguCGUGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 33776 0.72 0.340069
Target:  5'- -cAGCCCCcGCGGCGCaAGCGCG-CGc -3'
miRNA:   3'- acUCGGGGuCGCUGCGgUCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 90623 0.72 0.340069
Target:  5'- cGAGCUCgCGGaCGGCgGCCAGCuCGUCa -3'
miRNA:   3'- aCUCGGG-GUC-GCUG-CGGUCGuGCAGc -5'
6369 5' -60.7 NC_001847.1 + 88694 0.72 0.347587
Target:  5'- aGuGCCCUGGCGGCGCU-GCGCG-CGc -3'
miRNA:   3'- aCuCGGGGUCGCUGCGGuCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 113013 0.72 0.355223
Target:  5'- uUGcGCUCCAGC-ACGCCGccGCGCGUCu -3'
miRNA:   3'- -ACuCGGGGUCGcUGCGGU--CGUGCAGc -5'
6369 5' -60.7 NC_001847.1 + 32351 0.71 0.361417
Target:  5'- gGGGgCCCAGCccccgcgcgggggGGCGCCGGCgucgcggGCGUCGc -3'
miRNA:   3'- aCUCgGGGUCG-------------CUGCGGUCG-------UGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 81291 0.71 0.362977
Target:  5'- cGGcGCCgCCAGCGcCGCCAGCGcCGcCGc -3'
miRNA:   3'- aCU-CGG-GGUCGCuGCGGUCGU-GCaGC- -5'
6369 5' -60.7 NC_001847.1 + 99637 0.71 0.362977
Target:  5'- -aAGCCCCGGCGcgcACGCCGagcauaacGCGCGcCGg -3'
miRNA:   3'- acUCGGGGUCGC---UGCGGU--------CGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 46894 0.71 0.362977
Target:  5'- cGAGCgCCgcuuCAGCGAgGCUucggggGGCGCGUCGg -3'
miRNA:   3'- aCUCG-GG----GUCGCUgCGG------UCGUGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 105625 0.71 0.362977
Target:  5'- -cGGCCgCCAGCcGCGCCGGCACcUCc -3'
miRNA:   3'- acUCGG-GGUCGcUGCGGUCGUGcAGc -5'
6369 5' -60.7 NC_001847.1 + 2812 0.71 0.362977
Target:  5'- -cGGCCgCCAGCcGCGCCGGCACcUCc -3'
miRNA:   3'- acUCGG-GGUCGcUGCGGUCGUGcAGc -5'
6369 5' -60.7 NC_001847.1 + 53975 0.71 0.370055
Target:  5'- cGAGCCCUccgAGCGGCgcggcggGCCAGU-CGUCGc -3'
miRNA:   3'- aCUCGGGG---UCGCUG-------CGGUCGuGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 131921 0.71 0.370847
Target:  5'- -aAGCCgCGGCGGCGCggaGGCACGUgCGc -3'
miRNA:   3'- acUCGGgGUCGCUGCGg--UCGUGCA-GC- -5'
6369 5' -60.7 NC_001847.1 + 12497 0.71 0.370847
Target:  5'- -aAGCCCggaGGCcGCaGCCGGCGCGUCGu -3'
miRNA:   3'- acUCGGGg--UCGcUG-CGGUCGUGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.