miRNA display CGI


Results 101 - 120 of 506 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6369 5' -60.7 NC_001847.1 + 12497 0.71 0.370847
Target:  5'- -aAGCCCggaGGCcGCaGCCGGCGCGUCGu -3'
miRNA:   3'- acUCGGGg--UCGcUG-CGGUCGUGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 134265 0.71 0.370847
Target:  5'- -cGGCCCCGGCGcgggcCGCCGccGCGCGUgGa -3'
miRNA:   3'- acUCGGGGUCGCu----GCGGU--CGUGCAgC- -5'
6369 5' -60.7 NC_001847.1 + 61005 0.71 0.370847
Target:  5'- cGAgGCCgCCAuCGGCGCC-GCGCGUCa -3'
miRNA:   3'- aCU-CGG-GGUcGCUGCGGuCGUGCAGc -5'
6369 5' -60.7 NC_001847.1 + 101884 0.71 0.378833
Target:  5'- gGGGCUCCAucGCGuCgGCCAGCcCGUCGu -3'
miRNA:   3'- aCUCGGGGU--CGCuG-CGGUCGuGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 105000 0.71 0.378833
Target:  5'- aGGGCgCaCGGCG-CGCC-GCGCGUCGc -3'
miRNA:   3'- aCUCGgG-GUCGCuGCGGuCGUGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 69644 0.71 0.386118
Target:  5'- cGAGUCCCAGCcGCGCCgcgacccGGUACG-CGu -3'
miRNA:   3'- aCUCGGGGUCGcUGCGG-------UCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 56005 0.71 0.386933
Target:  5'- cGAGuCCCCcGCGACG--GGCACGUCc -3'
miRNA:   3'- aCUC-GGGGuCGCUGCggUCGUGCAGc -5'
6369 5' -60.7 NC_001847.1 + 97707 0.71 0.386933
Target:  5'- --cGUCCaCAGCGcCGCCAGCAaGUCGc -3'
miRNA:   3'- acuCGGG-GUCGCuGCGGUCGUgCAGC- -5'
6369 5' -60.7 NC_001847.1 + 55506 0.71 0.386933
Target:  5'- gUGGGCCCUgcugcuGGCGGCGCCcGcCGCGgggCGa -3'
miRNA:   3'- -ACUCGGGG------UCGCUGCGGuC-GUGCa--GC- -5'
6369 5' -60.7 NC_001847.1 + 2096 0.71 0.392671
Target:  5'- gGGGCCCgcgCGGCGGCgggccgcgaucucgGCCAGCGCcUCGg -3'
miRNA:   3'- aCUCGGG---GUCGCUG--------------CGGUCGUGcAGC- -5'
6369 5' -60.7 NC_001847.1 + 104909 0.71 0.392671
Target:  5'- gGGGCCCgcgCGGCGGCgggccgcgaucucgGCCAGCGCcUCGg -3'
miRNA:   3'- aCUCGGG---GUCGCUG--------------CGGUCGUGcAGC- -5'
6369 5' -60.7 NC_001847.1 + 105239 0.71 0.395147
Target:  5'- gGGGCCCCccGCGGCgGCCGGCAgGg-- -3'
miRNA:   3'- aCUCGGGGu-CGCUG-CGGUCGUgCagc -5'
6369 5' -60.7 NC_001847.1 + 2426 0.71 0.395147
Target:  5'- gGGGCCCCccGCGGCgGCCGGCAgGg-- -3'
miRNA:   3'- aCUCGGGGu-CGCUG-CGGUCGUgCagc -5'
6369 5' -60.7 NC_001847.1 + 61011 0.71 0.395147
Target:  5'- --cGCCCCGGCGccACGCgCAGCACcaCGg -3'
miRNA:   3'- acuCGGGGUCGC--UGCG-GUCGUGcaGC- -5'
6369 5' -60.7 NC_001847.1 + 125415 0.71 0.395147
Target:  5'- cGAcuGCCCCGGCGcCGCCGgaggacccGCGCGUgGc -3'
miRNA:   3'- aCU--CGGGGUCGCuGCGGU--------CGUGCAgC- -5'
6369 5' -60.7 NC_001847.1 + 16647 0.71 0.395147
Target:  5'- --uGCUCUuggcgaacguGGCGGCGCgGGCGCGUCGc -3'
miRNA:   3'- acuCGGGG----------UCGCUGCGgUCGUGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 79089 0.71 0.403473
Target:  5'- -aGGCUUCAGCGGCGCCucccagGGguCGUCGu -3'
miRNA:   3'- acUCGGGGUCGCUGCGG------UCguGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 70171 0.71 0.403473
Target:  5'- aGuGCUCCGGgCcGCugGCCAGCACGUCGu -3'
miRNA:   3'- aCuCGGGGUC-GcUG--CGGUCGUGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 3416 0.71 0.403473
Target:  5'- aGAGCagCCCGGgGGCGCCAGgCGCagcccaggggGUCGa -3'
miRNA:   3'- aCUCG--GGGUCgCUGCGGUC-GUG----------CAGC- -5'
6369 5' -60.7 NC_001847.1 + 100624 0.71 0.403473
Target:  5'- cGGGCCCUGGCGAcCGCCuGGCuGCGgCGc -3'
miRNA:   3'- aCUCGGGGUCGCU-GCGG-UCG-UGCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.