Results 61 - 80 of 506 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6369 | 5' | -60.7 | NC_001847.1 | + | 127374 | 0.66 | 0.679155 |
Target: 5'- cGAGCCUCGGC-ACcaaCGGC-CGUCGg -3' miRNA: 3'- aCUCGGGGUCGcUGcg-GUCGuGCAGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 80558 | 0.66 | 0.679155 |
Target: 5'- cGcGCCgCCAGCGcCGCCcagcccgcggGGC-CGUCGu -3' miRNA: 3'- aCuCGG-GGUCGCuGCGG----------UCGuGCAGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 986 | 0.66 | 0.679155 |
Target: 5'- gGGGCuUCCGccGCGGCGgCGGCACG-CGc -3' miRNA: 3'- aCUCG-GGGU--CGCUGCgGUCGUGCaGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 273 | 0.66 | 0.679155 |
Target: 5'- cGAGCCCgGGgGcCGCCGagcccGCGCGggCGc -3' miRNA: 3'- aCUCGGGgUCgCuGCGGU-----CGUGCa-GC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 375 | 0.66 | 0.679155 |
Target: 5'- --cGCCCC-GCG-CGCC-GCGCGcCGg -3' miRNA: 3'- acuCGGGGuCGCuGCGGuCGUGCaGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 57418 | 0.66 | 0.679155 |
Target: 5'- cGGGCCUCGcacGCG-CGCCAaGCGCG-Ca -3' miRNA: 3'- aCUCGGGGU---CGCuGCGGU-CGUGCaGc -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 71848 | 0.66 | 0.678163 |
Target: 5'- aGAGCacgccucCCCAGCGGuggaagcggcCGCgAGCGCG-CGg -3' miRNA: 3'- aCUCG-------GGGUCGCU----------GCGgUCGUGCaGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 15119 | 0.66 | 0.678163 |
Target: 5'- -cGGCCCUgacGGCGGCggugcugGCCuugcuacuGCGCGUCGg -3' miRNA: 3'- acUCGGGG---UCGCUG-------CGGu-------CGUGCAGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 93620 | 0.66 | 0.678163 |
Target: 5'- gGuGCUCCGGCcggcgcggccgcgGACGUCuGCACGcUCGg -3' miRNA: 3'- aCuCGGGGUCG-------------CUGCGGuCGUGC-AGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 38767 | 0.66 | 0.676178 |
Target: 5'- cGGGCCCguGCuGGagcacgagcgucccUGCCggcAGCGCGUCGc -3' miRNA: 3'- aCUCGGGguCG-CU--------------GCGG---UCGUGCAGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 133245 | 0.66 | 0.676178 |
Target: 5'- --uGCCCCGcaucguacauguucGUGAUGUUGGCGCGUCu -3' miRNA: 3'- acuCGGGGU--------------CGCUGCGGUCGUGCAGc -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 122799 | 0.66 | 0.676178 |
Target: 5'- cGAGCCaggcccaccgcucaCCAGCGA-GCCGGCGgG-CGc -3' miRNA: 3'- aCUCGG--------------GGUCGCUgCGGUCGUgCaGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 102244 | 0.66 | 0.673198 |
Target: 5'- -cGGCCCCGGCuucccCGCCGGCccccgaggccucgcCGUCGg -3' miRNA: 3'- acUCGGGGUCGcu---GCGGUCGu-------------GCAGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 18183 | 0.66 | 0.669219 |
Target: 5'- cGGGCCCaUGGCgGACGCgCGGCGagGUCu -3' miRNA: 3'- aCUCGGG-GUCG-CUGCG-GUCGUg-CAGc -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 51064 | 0.66 | 0.669219 |
Target: 5'- -aGGCCaCCgaGGCGuucguGCGCgGGCugGUCGa -3' miRNA: 3'- acUCGG-GG--UCGC-----UGCGgUCGugCAGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 60938 | 0.66 | 0.669219 |
Target: 5'- cGAGCCacaUAGCG-CGCgCAGaggaACGUCa -3' miRNA: 3'- aCUCGGg--GUCGCuGCG-GUCg---UGCAGc -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 51514 | 0.66 | 0.669219 |
Target: 5'- --cGCgCCGguGCGGCGCCGGCAgG-CGg -3' miRNA: 3'- acuCGgGGU--CGCUGCGGUCGUgCaGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 8438 | 0.66 | 0.669219 |
Target: 5'- cGGGUCggaGGCGGCGCCGGguCGgaggCGg -3' miRNA: 3'- aCUCGGgg-UCGCUGCGGUCguGCa---GC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 118782 | 0.66 | 0.669219 |
Target: 5'- gUGAGCggcaCCGGCaGcCGCCAGCGCcUCc -3' miRNA: 3'- -ACUCGg---GGUCG-CuGCGGUCGUGcAGc -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 104789 | 0.66 | 0.669219 |
Target: 5'- aGGGCCcgCCAGCaACGCgCGGUgcuCGUCGu -3' miRNA: 3'- aCUCGG--GGUCGcUGCG-GUCGu--GCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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