miRNA display CGI


Results 81 - 100 of 506 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6369 5' -60.7 NC_001847.1 + 104789 0.66 0.669219
Target:  5'- aGGGCCcgCCAGCaACGCgCGGUgcuCGUCGu -3'
miRNA:   3'- aCUCGG--GGUCGcUGCG-GUCGu--GCAGC- -5'
6369 5' -60.7 NC_001847.1 + 111251 0.66 0.669219
Target:  5'- cGGGUCggaGGCGGCGCCGGguCGgaggCGg -3'
miRNA:   3'- aCUCGGgg-UCGCUGCGGUCguGCa---GC- -5'
6369 5' -60.7 NC_001847.1 + 51514 0.66 0.669219
Target:  5'- --cGCgCCGguGCGGCGCCGGCAgG-CGg -3'
miRNA:   3'- acuCGgGGU--CGCUGCGGUCGUgCaGC- -5'
6369 5' -60.7 NC_001847.1 + 58746 0.66 0.659255
Target:  5'- -cGGCCCgaCAGCGGCGgCGGcCGCGaCGg -3'
miRNA:   3'- acUCGGG--GUCGCUGCgGUC-GUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 897 0.66 0.659255
Target:  5'- gGGGCCgCC-GCGGcCGCCGGC-CGcCGc -3'
miRNA:   3'- aCUCGG-GGuCGCU-GCGGUCGuGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 19220 0.66 0.659255
Target:  5'- cGAGUgCCGcuGCGACaGCCAGCGCcugCGn -3'
miRNA:   3'- aCUCGgGGU--CGCUG-CGGUCGUGca-GC- -5'
6369 5' -60.7 NC_001847.1 + 34366 0.66 0.659255
Target:  5'- aGAGaaggCCAGCGAgCGCCAugGCGCGgggCGa -3'
miRNA:   3'- aCUCgg--GGUCGCU-GCGGU--CGUGCa--GC- -5'
6369 5' -60.7 NC_001847.1 + 44189 0.66 0.659255
Target:  5'- -cAGCCCCuuCGAgaGCCAGCugGUg- -3'
miRNA:   3'- acUCGGGGucGCUg-CGGUCGugCAgc -5'
6369 5' -60.7 NC_001847.1 + 51961 0.66 0.659255
Target:  5'- cGcGCCCCccgcCGucCGCCAGCcCGUCGg -3'
miRNA:   3'- aCuCGGGGuc--GCu-GCGGUCGuGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 103710 0.66 0.659255
Target:  5'- gGGGCCgCC-GCGGcCGCCGGC-CGcCGc -3'
miRNA:   3'- aCUCGG-GGuCGCU-GCGGUCGuGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 2919 0.66 0.659255
Target:  5'- gGGGCCacgguCC-GCGcCGCCAGCGCGg-- -3'
miRNA:   3'- aCUCGG-----GGuCGCuGCGGUCGUGCagc -5'
6369 5' -60.7 NC_001847.1 + 80508 0.66 0.659255
Target:  5'- aGAGCCgCuCGGCauaGCGCUGucggcGCACGUCGg -3'
miRNA:   3'- aCUCGG-G-GUCGc--UGCGGU-----CGUGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 105732 0.66 0.659255
Target:  5'- gGGGCCacgguCC-GCGcCGCCAGCGCGg-- -3'
miRNA:   3'- aCUCGG-----GGuCGCuGCGGUCGUGCagc -5'
6369 5' -60.7 NC_001847.1 + 91503 0.66 0.659255
Target:  5'- cGAGCCCUcGCGcGCGUccugCAGCaggcucuccaGCGUCGa -3'
miRNA:   3'- aCUCGGGGuCGC-UGCG----GUCG----------UGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 53852 0.66 0.659255
Target:  5'- -cGGCgCUGGCGGCGCUGGCgGCGcCGa -3'
miRNA:   3'- acUCGgGGUCGCUGCGGUCG-UGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 50529 0.66 0.655262
Target:  5'- -uGGCCCCgcucgaaGGCGACGCagCGGCgcugcuggaccgcgGCGUCGc -3'
miRNA:   3'- acUCGGGG-------UCGCUGCG--GUCG--------------UGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 748 0.66 0.649269
Target:  5'- cGGGCCCCccuagGGCGAgGCCGGCc----- -3'
miRNA:   3'- aCUCGGGG-----UCGCUgCGGUCGugcagc -5'
6369 5' -60.7 NC_001847.1 + 10213 0.66 0.649269
Target:  5'- cGGGCCCagGGCG-CGCCcGC-UGUCGc -3'
miRNA:   3'- aCUCGGGg-UCGCuGCGGuCGuGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 72745 0.66 0.649269
Target:  5'- -cAGCgCCGGCGgguGCGCUaaAGaCGCGUCGg -3'
miRNA:   3'- acUCGgGGUCGC---UGCGG--UC-GUGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 80335 0.66 0.649269
Target:  5'- cGuGCCC--GCGcuCGCCAGCGCGgcgCGg -3'
miRNA:   3'- aCuCGGGguCGCu-GCGGUCGUGCa--GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.