miRNA display CGI


Results 41 - 60 of 506 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6369 5' -60.7 NC_001847.1 + 6487 0.67 0.643271
Target:  5'- -cGGCCUgcaggucguagguagCGGCGuCGCCGGCGCGcUCa -3'
miRNA:   3'- acUCGGG---------------GUCGCuGCGGUCGUGC-AGc -5'
6369 5' -60.7 NC_001847.1 + 7142 0.67 0.589344
Target:  5'- gUGAGCagcaUCAGCGAaaacccgauCGCgCAGC-CGUCGg -3'
miRNA:   3'- -ACUCGg---GGUCGCU---------GCG-GUCGuGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 7218 0.66 0.689054
Target:  5'- cUGGGCCguCCA-UGGCGCUgcagcGGCugGUCGg -3'
miRNA:   3'- -ACUCGG--GGUcGCUGCGG-----UCGugCAGC- -5'
6369 5' -60.7 NC_001847.1 + 7793 0.7 0.464718
Target:  5'- cGGGCCCCGccgccccugccGCGGCaGCCGGC-CGccUCGg -3'
miRNA:   3'- aCUCGGGGU-----------CGCUG-CGGUCGuGC--AGC- -5'
6369 5' -60.7 NC_001847.1 + 8438 0.66 0.669219
Target:  5'- cGGGUCggaGGCGGCGCCGGguCGgaggCGg -3'
miRNA:   3'- aCUCGGgg-UCGCUGCGGUCguGCa---GC- -5'
6369 5' -60.7 NC_001847.1 + 8595 0.66 0.649269
Target:  5'- -aGGCCCCgccaggGGCGGCGCuCGGC-CGggggCGg -3'
miRNA:   3'- acUCGGGG------UCGCUGCG-GUCGuGCa---GC- -5'
6369 5' -60.7 NC_001847.1 + 8876 0.82 0.082259
Target:  5'- uUGGGCCCCAGa-GCGCCAGCGaGUCGg -3'
miRNA:   3'- -ACUCGGGGUCgcUGCGGUCGUgCAGC- -5'
6369 5' -60.7 NC_001847.1 + 9725 0.76 0.180811
Target:  5'- cGGGuCCuCCGGCGGCGCCGGgGCaGUCGc -3'
miRNA:   3'- aCUC-GG-GGUCGCUGCGGUCgUG-CAGC- -5'
6369 5' -60.7 NC_001847.1 + 9977 0.69 0.501813
Target:  5'- cUGGGCCCCgaGGCGcuGCGCCucGCcaucgACGUCa -3'
miRNA:   3'- -ACUCGGGG--UCGC--UGCGGu-CG-----UGCAGc -5'
6369 5' -60.7 NC_001847.1 + 10073 0.66 0.689054
Target:  5'- cGGG-CCCAGCGcccCGCC-GCGCG-CGg -3'
miRNA:   3'- aCUCgGGGUCGCu--GCGGuCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 10213 0.66 0.649269
Target:  5'- cGGGCCCagGGCG-CGCCcGC-UGUCGc -3'
miRNA:   3'- aCUCGGGg-UCGCuGCGGuCGuGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 11669 0.68 0.569533
Target:  5'- -cGGCCCCAGCcgagcccGCGgCGGC-CGUCGc -3'
miRNA:   3'- acUCGGGGUCGc------UGCgGUCGuGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 12014 0.66 0.689054
Target:  5'- -uGGCUCUGG-GGCGCCGGCGagGUCGu -3'
miRNA:   3'- acUCGGGGUCgCUGCGGUCGUg-CAGC- -5'
6369 5' -60.7 NC_001847.1 + 12435 0.69 0.520842
Target:  5'- cGGGCUCCAa-GGCGCCGGCACa--- -3'
miRNA:   3'- aCUCGGGGUcgCUGCGGUCGUGcagc -5'
6369 5' -60.7 NC_001847.1 + 12497 0.71 0.370847
Target:  5'- -aAGCCCggaGGCcGCaGCCGGCGCGUCGu -3'
miRNA:   3'- acUCGGGg--UCGcUG-CGGUCGUGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 12665 0.69 0.511291
Target:  5'- gGAGCgguaCGGCGACGCgAagcugcacuGCGCGUCGg -3'
miRNA:   3'- aCUCGgg--GUCGCUGCGgU---------CGUGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 13008 0.7 0.420453
Target:  5'- -cGGCgCCCuGCG-CGCCGGC-CGUCGc -3'
miRNA:   3'- acUCG-GGGuCGCuGCGGUCGuGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 13230 0.68 0.559688
Target:  5'- cGAGCUCC-GCGAUgGCCAGCGgGgccacgCGg -3'
miRNA:   3'- aCUCGGGGuCGCUG-CGGUCGUgCa-----GC- -5'
6369 5' -60.7 NC_001847.1 + 13404 0.74 0.241491
Target:  5'- cGGGCCCUgggagaaagacgGGCG-CGCCAGCGCG-CGc -3'
miRNA:   3'- aCUCGGGG------------UCGCuGCGGUCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 14416 0.68 0.573483
Target:  5'- cGAGCCUCuguGCGgggcuccgcuguuugGCGCCgAGCGCG-CGg -3'
miRNA:   3'- aCUCGGGGu--CGC---------------UGCGG-UCGUGCaGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.