miRNA display CGI


Results 61 - 80 of 506 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6369 5' -60.7 NC_001847.1 + 14815 0.68 0.559688
Target:  5'- gGAGCUgC-GCGGCGCCcuGCGCG-CGg -3'
miRNA:   3'- aCUCGGgGuCGCUGCGGu-CGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 14847 0.68 0.559688
Target:  5'- -cGGCCCC-GCaGCGCgAGCguuGCGUCGg -3'
miRNA:   3'- acUCGGGGuCGcUGCGgUCG---UGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 15119 0.66 0.678163
Target:  5'- -cGGCCCUgacGGCGGCggugcugGCCuugcuacuGCGCGUCGg -3'
miRNA:   3'- acUCGGGG---UCGCUG-------CGGu-------CGUGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 15530 0.68 0.569533
Target:  5'- gGAGCCgCgGGCugcuGGCGCCGGUGCG-CGc -3'
miRNA:   3'- aCUCGG-GgUCG----CUGCGGUCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 16125 0.76 0.199373
Target:  5'- gUGcGCCCCAccuGCGggucugcgaucaGCGCCAGCAUGUCGc -3'
miRNA:   3'- -ACuCGGGGU---CGC------------UGCGGUCGUGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 16463 0.67 0.609273
Target:  5'- cGAGgCCC-GCGGCGCagAGCGCGg-- -3'
miRNA:   3'- aCUCgGGGuCGCUGCGg-UCGUGCagc -5'
6369 5' -60.7 NC_001847.1 + 16647 0.71 0.395147
Target:  5'- --uGCUCUuggcgaacguGGCGGCGCgGGCGCGUCGc -3'
miRNA:   3'- acuCGGGG----------UCGCUGCGgUCGUGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 16717 0.7 0.464718
Target:  5'- gGAGCCCCA-CGGCGCCGagaccGCAgG-CGa -3'
miRNA:   3'- aCUCGGGGUcGCUGCGGU-----CGUgCaGC- -5'
6369 5' -60.7 NC_001847.1 + 16815 0.68 0.549891
Target:  5'- aGAGCCCaaacuccggauCGGUGGCGCgGGCAuCGgggCGg -3'
miRNA:   3'- aCUCGGG-----------GUCGCUGCGgUCGU-GCa--GC- -5'
6369 5' -60.7 NC_001847.1 + 17673 0.68 0.530463
Target:  5'- aGAGCUCCAgGCGcgcacCGCCAGUGgCGUUGu -3'
miRNA:   3'- aCUCGGGGU-CGCu----GCGGUCGU-GCAGC- -5'
6369 5' -60.7 NC_001847.1 + 17801 0.84 0.058497
Target:  5'- cGGGCCCCAGCGggcgggaggGCGCCAugccagugcggcGCACGUCGg -3'
miRNA:   3'- aCUCGGGGUCGC---------UGCGGU------------CGUGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 18183 0.66 0.669219
Target:  5'- cGGGCCCaUGGCgGACGCgCGGCGagGUCu -3'
miRNA:   3'- aCUCGGG-GUCG-CUGCG-GUCGUg-CAGc -5'
6369 5' -60.7 NC_001847.1 + 18792 0.75 0.235846
Target:  5'- cGAGCUCCgcggcggcGGCGcGCGCCAGCGCG-CGc -3'
miRNA:   3'- aCUCGGGG--------UCGC-UGCGGUCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 18954 0.69 0.492412
Target:  5'- cGGcGUCCgggCGGCGACGaCCAGCGCGgccgCGg -3'
miRNA:   3'- aCU-CGGG---GUCGCUGC-GGUCGUGCa---GC- -5'
6369 5' -60.7 NC_001847.1 + 18986 0.69 0.520842
Target:  5'- -nGGCgCCC-GCGGcCGCCAGCGCcUCGg -3'
miRNA:   3'- acUCG-GGGuCGCU-GCGGUCGUGcAGC- -5'
6369 5' -60.7 NC_001847.1 + 19220 0.66 0.659255
Target:  5'- cGAGUgCCGcuGCGACaGCCAGCGCcugCGn -3'
miRNA:   3'- aCUCGgGGU--CGCUG-CGGUCGUGca-GC- -5'
6369 5' -60.7 NC_001847.1 + 19250 0.69 0.483094
Target:  5'- cGAGCCggCCaAGCGGCGCgAGCcggcggcgcaGCGUCu -3'
miRNA:   3'- aCUCGG--GG-UCGCUGCGgUCG----------UGCAGc -5'
6369 5' -60.7 NC_001847.1 + 19623 0.73 0.311185
Target:  5'- cGGGCCCgGGgcgcCGGCGUCGGCGCG-CGg -3'
miRNA:   3'- aCUCGGGgUC----GCUGCGGUCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 20263 0.68 0.569533
Target:  5'- aGAGCgagaCGGCGaggucgGCGCC-GCGCGUCGg -3'
miRNA:   3'- aCUCGgg--GUCGC------UGCGGuCGUGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 20976 0.67 0.629267
Target:  5'- cGAGCgCCCAGUGagcgcGCGCCGcugcauGCugGUgCGa -3'
miRNA:   3'- aCUCG-GGGUCGC-----UGCGGU------CGugCA-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.