miRNA display CGI


Results 81 - 100 of 506 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6369 5' -60.7 NC_001847.1 + 21668 0.67 0.603285
Target:  5'- cGAGCCCCccGGCGACGgguauggcgaggagcCCGGCGaggaGcCGg -3'
miRNA:   3'- aCUCGGGG--UCGCUGC---------------GGUCGUg---CaGC- -5'
6369 5' -60.7 NC_001847.1 + 21764 0.7 0.429103
Target:  5'- gGGGCCgCCGGCGccgggcccgGCGCCGGC-CGggcgCGg -3'
miRNA:   3'- aCUCGG-GGUCGC---------UGCGGUCGuGCa---GC- -5'
6369 5' -60.7 NC_001847.1 + 22133 0.74 0.259105
Target:  5'- cUGGGCCCggCGGCGGCGgCGGCGCG-Ca -3'
miRNA:   3'- -ACUCGGG--GUCGCUGCgGUCGUGCaGc -5'
6369 5' -60.7 NC_001847.1 + 22194 0.69 0.492412
Target:  5'- aGAGCUgCAGCaGCGCCucccAGCACG-CGu -3'
miRNA:   3'- aCUCGGgGUCGcUGCGG----UCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 22380 0.66 0.669219
Target:  5'- cGAgGCCCCcGCGGgGCCGGgguCGCGaCGg -3'
miRNA:   3'- aCU-CGGGGuCGCUgCGGUC---GUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 22399 0.66 0.649269
Target:  5'- cGGGCCgCGGCGA-GCguGCuCGUCc -3'
miRNA:   3'- aCUCGGgGUCGCUgCGguCGuGCAGc -5'
6369 5' -60.7 NC_001847.1 + 23100 0.66 0.689054
Target:  5'- cGuAGCCCgC-GCG-CGCCAcCGCGUCGu -3'
miRNA:   3'- aC-UCGGG-GuCGCuGCGGUcGUGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 23780 0.67 0.629267
Target:  5'- gGAuGCCCgGGCGcgagguCGcCCAGCGCGgCGg -3'
miRNA:   3'- aCU-CGGGgUCGCu-----GC-GGUCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 25202 0.72 0.330473
Target:  5'- cGAGCCCCGcGCG-CgGCCGGCaaagagcaugaucgGCGUCGc -3'
miRNA:   3'- aCUCGGGGU-CGCuG-CGGUCG--------------UGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 26391 0.7 0.455668
Target:  5'- -cGGCgCCCAGCGcggcaggaACGCCGuCGCGUCGc -3'
miRNA:   3'- acUCG-GGGUCGC--------UGCGGUcGUGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 27193 0.66 0.689054
Target:  5'- gGuGCUUCAGCGuuaggacgggcGCGCCGGgGCGcUCGa -3'
miRNA:   3'- aCuCGGGGUCGC-----------UGCGGUCgUGC-AGC- -5'
6369 5' -60.7 NC_001847.1 + 27360 0.68 0.540148
Target:  5'- cGcAGCCCCAGCuGCccccCCGGCGCGcgCGa -3'
miRNA:   3'- aC-UCGGGGUCGcUGc---GGUCGUGCa-GC- -5'
6369 5' -60.7 NC_001847.1 + 27668 0.69 0.483094
Target:  5'- -cGGCCCUgcuCGACG-CGGCGCGUCGg -3'
miRNA:   3'- acUCGGGGuc-GCUGCgGUCGUGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 27705 0.7 0.429103
Target:  5'- cGAGCgCCGGCGggccgcccGCGCCgAGCugGcCGa -3'
miRNA:   3'- aCUCGgGGUCGC--------UGCGG-UCGugCaGC- -5'
6369 5' -60.7 NC_001847.1 + 28138 0.69 0.520842
Target:  5'- uUGGGCCCgaggacugCAGCGACGCCGGguCc--- -3'
miRNA:   3'- -ACUCGGG--------GUCGCUGCGGUCguGcagc -5'
6369 5' -60.7 NC_001847.1 + 28178 0.66 0.679155
Target:  5'- cGGGCCCgaggacugCAGCGAUGCCGGgCcCGagGa -3'
miRNA:   3'- aCUCGGG--------GUCGCUGCGGUC-GuGCagC- -5'
6369 5' -60.7 NC_001847.1 + 28390 0.76 0.204265
Target:  5'- cGGcGCCCCccccgccGCGGCGCCAGCGCGggCGc -3'
miRNA:   3'- aCU-CGGGGu------CGCUGCGGUCGUGCa-GC- -5'
6369 5' -60.7 NC_001847.1 + 28490 0.66 0.689054
Target:  5'- gGAcGCCgCGGCGccgcCGCUAGCGCG-CGc -3'
miRNA:   3'- aCU-CGGgGUCGCu---GCGGUCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 29091 0.66 0.698908
Target:  5'- --uGCCgCCGGCGA-GCaCGGCGCGggCGg -3'
miRNA:   3'- acuCGG-GGUCGCUgCG-GUCGUGCa-GC- -5'
6369 5' -60.7 NC_001847.1 + 29361 0.79 0.124215
Target:  5'- -cGGCCCCGGCGGCGCU-GCGCGcCGa -3'
miRNA:   3'- acUCGGGGUCGCUGCGGuCGUGCaGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.