miRNA display CGI


Results 101 - 120 of 506 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6369 5' -60.7 NC_001847.1 + 29506 0.68 0.57942
Target:  5'- -cAGCCcgCCGGCGGaggUGCCGGCGCGgcuggCGg -3'
miRNA:   3'- acUCGG--GGUCGCU---GCGGUCGUGCa----GC- -5'
6369 5' -60.7 NC_001847.1 + 29527 0.71 0.411909
Target:  5'- aGAGCucgCCCGcGCGGCGCgGGCGC-UCGa -3'
miRNA:   3'- aCUCG---GGGU-CGCUGCGgUCGUGcAGC- -5'
6369 5' -60.7 NC_001847.1 + 29559 0.69 0.483094
Target:  5'- -aGGCCgCCGGCGgggGCGCCGGCGCcggCGc -3'
miRNA:   3'- acUCGG-GGUCGC---UGCGGUCGUGca-GC- -5'
6369 5' -60.7 NC_001847.1 + 30183 0.7 0.429103
Target:  5'- cGAGCCCUGGCG-C-CCGGCGC-UCGc -3'
miRNA:   3'- aCUCGGGGUCGCuGcGGUCGUGcAGC- -5'
6369 5' -60.7 NC_001847.1 + 30251 0.68 0.583386
Target:  5'- cGGGCCCCgcggGGCGcucgccgccaccgcuGCGgCGGCGCGUgGc -3'
miRNA:   3'- aCUCGGGG----UCGC---------------UGCgGUCGUGCAgC- -5'
6369 5' -60.7 NC_001847.1 + 30747 0.7 0.437857
Target:  5'- -uGGCCCgAGCGgcGCGCUGGCGCG-CGc -3'
miRNA:   3'- acUCGGGgUCGC--UGCGGUCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 30765 0.66 0.649269
Target:  5'- -cGGCCCgCuGCaGCGCC-GCGCGUCu -3'
miRNA:   3'- acUCGGG-GuCGcUGCGGuCGUGCAGc -5'
6369 5' -60.7 NC_001847.1 + 30933 0.68 0.549891
Target:  5'- cGuGCCCCGcGCGAguacCGgCAGCGCGUg- -3'
miRNA:   3'- aCuCGGGGU-CGCU----GCgGUCGUGCAgc -5'
6369 5' -60.7 NC_001847.1 + 31030 0.7 0.429103
Target:  5'- cGcGCgCCGGCaACGCCGGCcgACGUCGc -3'
miRNA:   3'- aCuCGgGGUCGcUGCGGUCG--UGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 31223 0.67 0.639271
Target:  5'- gGAGgCCgCGGCGGCGCCGccCGCGgccgCGg -3'
miRNA:   3'- aCUCgGG-GUCGCUGCGGUc-GUGCa---GC- -5'
6369 5' -60.7 NC_001847.1 + 31282 0.66 0.689054
Target:  5'- aGGGCCCgCGGgaGACGCUcgugcugcugcGGCGCGcCGc -3'
miRNA:   3'- aCUCGGG-GUCg-CUGCGG-----------UCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 31363 0.68 0.530463
Target:  5'- -aAGCCCCGcCGGCccggguGCCGGCGCaGUCGu -3'
miRNA:   3'- acUCGGGGUcGCUG------CGGUCGUG-CAGC- -5'
6369 5' -60.7 NC_001847.1 + 31405 0.67 0.629267
Target:  5'- cGGGCUCgGGCuucccGGCGCCGGCGgG-CGg -3'
miRNA:   3'- aCUCGGGgUCG-----CUGCGGUCGUgCaGC- -5'
6369 5' -60.7 NC_001847.1 + 31452 0.71 0.370847
Target:  5'- -cGGCCCCGGCGcgggcCGCCGccGCGCGUgGa -3'
miRNA:   3'- acUCGGGGUCGCu----GCGGU--CGUGCAgC- -5'
6369 5' -60.7 NC_001847.1 + 31614 0.68 0.549891
Target:  5'- cGAGUCCCGGUGG-GCgGGCGCG-Cu -3'
miRNA:   3'- aCUCGGGGUCGCUgCGgUCGUGCaGc -5'
6369 5' -60.7 NC_001847.1 + 31737 0.67 0.629267
Target:  5'- cGAGCCCUAugucgagcggcGCGugGUCAGCgugcacccgcgcGCGcCGg -3'
miRNA:   3'- aCUCGGGGU-----------CGCugCGGUCG------------UGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 31862 0.66 0.669219
Target:  5'- cGGGCUcgCCGGCGuugcUGCCGGCGgagccCGUCGc -3'
miRNA:   3'- aCUCGG--GGUCGCu---GCGGUCGU-----GCAGC- -5'
6369 5' -60.7 NC_001847.1 + 31930 0.68 0.568547
Target:  5'- cGGGCCCCggucucggucggAGCGcgguccgGCGCgCGGCGCG-CGg -3'
miRNA:   3'- aCUCGGGG------------UCGC-------UGCG-GUCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 32023 0.67 0.628266
Target:  5'- cGaAGCUCCGGCGgggcgcggggacgGCGCCcGCGCGggcUCGg -3'
miRNA:   3'- aC-UCGGGGUCGC-------------UGCGGuCGUGC---AGC- -5'
6369 5' -60.7 NC_001847.1 + 32080 0.76 0.204265
Target:  5'- cGGGCCCCuG-GGCGCCGG-GCGUCGg -3'
miRNA:   3'- aCUCGGGGuCgCUGCGGUCgUGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.