miRNA display CGI


Results 121 - 140 of 506 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6369 5' -60.7 NC_001847.1 + 32205 0.68 0.569533
Target:  5'- cGAGgCCCgcgGGCGGgGCCGGgGCG-CGg -3'
miRNA:   3'- aCUCgGGG---UCGCUgCGGUCgUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 32298 0.7 0.420453
Target:  5'- -cGGCCCC-GCGACGCCGcCGCGgaaCGg -3'
miRNA:   3'- acUCGGGGuCGCUGCGGUcGUGCa--GC- -5'
6369 5' -60.7 NC_001847.1 + 32327 0.66 0.689054
Target:  5'- gGGGCCCgC-GCGGCGC-GGCGCGg-- -3'
miRNA:   3'- aCUCGGG-GuCGCUGCGgUCGUGCagc -5'
6369 5' -60.7 NC_001847.1 + 32351 0.71 0.361417
Target:  5'- gGGGgCCCAGCccccgcgcgggggGGCGCCGGCgucgcggGCGUCGc -3'
miRNA:   3'- aCUCgGGGUCG-------------CUGCGGUCG-------UGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 32486 0.69 0.492412
Target:  5'- --cGCCCUcGCGGCcgcucCCGGCGCGUCa -3'
miRNA:   3'- acuCGGGGuCGCUGc----GGUCGUGCAGc -5'
6369 5' -60.7 NC_001847.1 + 32669 0.7 0.464718
Target:  5'- -cGGCgCCGGCGGCGCgGGCcCGcUCGa -3'
miRNA:   3'- acUCGgGGUCGCUGCGgUCGuGC-AGC- -5'
6369 5' -60.7 NC_001847.1 + 32799 0.68 0.530463
Target:  5'- cGAGUCCgAGCGcucuuugagcgcGCGCgAGCGCG-CGa -3'
miRNA:   3'- aCUCGGGgUCGC------------UGCGgUCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 33139 0.68 0.57942
Target:  5'- cGAGCgCUuccGCGugGCgAGCGCGgCGg -3'
miRNA:   3'- aCUCGgGGu--CGCugCGgUCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 33276 0.67 0.599297
Target:  5'- gGAGCCCCugauuggcgaGGaCGACGCCccCGCGUUu -3'
miRNA:   3'- aCUCGGGG----------UC-GCUGCGGucGUGCAGc -5'
6369 5' -60.7 NC_001847.1 + 33616 0.68 0.569533
Target:  5'- gGAcGCCCUGGCGACG--GGCGCGgCGg -3'
miRNA:   3'- aCU-CGGGGUCGCUGCggUCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 33776 0.72 0.340069
Target:  5'- -cAGCCCCcGCGGCGCaAGCGCG-CGc -3'
miRNA:   3'- acUCGGGGuCGCUGCGgUCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 33796 0.68 0.569533
Target:  5'- gGGGCUgCGcGCGGCGcCCGGCGCGcUGg -3'
miRNA:   3'- aCUCGGgGU-CGCUGC-GGUCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 34045 0.72 0.318227
Target:  5'- aUGGGCCCC-GCGGCGC--GCGCGUUu -3'
miRNA:   3'- -ACUCGGGGuCGCUGCGguCGUGCAGc -5'
6369 5' -60.7 NC_001847.1 + 34192 0.69 0.501813
Target:  5'- cGAGCCCCGcuguuaccGCGGCGgcuaCCAGCAcCGcCGc -3'
miRNA:   3'- aCUCGGGGU--------CGCUGC----GGUCGU-GCaGC- -5'
6369 5' -60.7 NC_001847.1 + 34286 0.68 0.549891
Target:  5'- cGAcCCCCGGCGG-GCCGGCGC-UCc -3'
miRNA:   3'- aCUcGGGGUCGCUgCGGUCGUGcAGc -5'
6369 5' -60.7 NC_001847.1 + 34366 0.66 0.659255
Target:  5'- aGAGaaggCCAGCGAgCGCCAugGCGCGgggCGa -3'
miRNA:   3'- aCUCgg--GGUCGCU-GCGGU--CGUGCa--GC- -5'
6369 5' -60.7 NC_001847.1 + 34595 0.67 0.599297
Target:  5'- -aGGCCCgGGCGcuggcGCGgCGGCGCGcCGa -3'
miRNA:   3'- acUCGGGgUCGC-----UGCgGUCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 34692 0.7 0.454768
Target:  5'- gGAGCgCUGGCGcgaggacuugcGCGCCgcgcuggAGCGCGUCGa -3'
miRNA:   3'- aCUCGgGGUCGC-----------UGCGG-------UCGUGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 35684 0.67 0.629267
Target:  5'- -uGGCCCCgAGCGGCGCgCuGCGCa--- -3'
miRNA:   3'- acUCGGGG-UCGCUGCG-GuCGUGcagc -5'
6369 5' -60.7 NC_001847.1 + 36990 0.74 0.271421
Target:  5'- cGGGCCCgCgccgAGCGGCGgCGGCGCGcUCGa -3'
miRNA:   3'- aCUCGGG-G----UCGCUGCgGUCGUGC-AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.