miRNA display CGI


Results 61 - 80 of 506 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6369 5' -60.7 NC_001847.1 + 117284 0.74 0.259105
Target:  5'- cGGGCgaCCCGGCGGCGCUGGCaACG-CGa -3'
miRNA:   3'- aCUCG--GGGUCGCUGCGGUCG-UGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 116449 0.68 0.559688
Target:  5'- gUGGGCgCUGGCGcACGCgCGGCGCGg-- -3'
miRNA:   3'- -ACUCGgGGUCGC-UGCG-GUCGUGCagc -5'
6369 5' -60.7 NC_001847.1 + 116114 0.66 0.679155
Target:  5'- cGGGCCugCCGGCGGgGUCAcGCGCGa-- -3'
miRNA:   3'- aCUCGG--GGUCGCUgCGGU-CGUGCagc -5'
6369 5' -60.7 NC_001847.1 + 115576 0.69 0.492412
Target:  5'- cGGGCCgCGGCGAuCGCgGGCGuCGaUCGc -3'
miRNA:   3'- aCUCGGgGUCGCU-GCGgUCGU-GC-AGC- -5'
6369 5' -60.7 NC_001847.1 + 115501 0.67 0.609273
Target:  5'- cGGGCCCgcaAGCggccgcgcgccGACGCCGGCGCccCGg -3'
miRNA:   3'- aCUCGGGg--UCG-----------CUGCGGUCGUGcaGC- -5'
6369 5' -60.7 NC_001847.1 + 115056 0.68 0.548914
Target:  5'- aGAGCUCCAGCuGGCGCUcgccccgAGCGCa--- -3'
miRNA:   3'- aCUCGGGGUCG-CUGCGG-------UCGUGcagc -5'
6369 5' -60.7 NC_001847.1 + 114634 0.66 0.649269
Target:  5'- gUGGGCCCCcgcccGCGacgacGCGCgAGC-CGUCu -3'
miRNA:   3'- -ACUCGGGGu----CGC-----UGCGgUCGuGCAGc -5'
6369 5' -60.7 NC_001847.1 + 114168 0.66 0.689054
Target:  5'- gGAGgCCUAGUGcgcGCGCCcGCuuauagGCGUCGa -3'
miRNA:   3'- aCUCgGGGUCGC---UGCGGuCG------UGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 113940 0.68 0.548914
Target:  5'- -cGGUCgCGGCGGCGUCuccuacgccgccgGGCGCGUCGc -3'
miRNA:   3'- acUCGGgGUCGCUGCGG-------------UCGUGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 113382 1.07 0.0012
Target:  5'- gUGAGCCCCAGCGACGCCAGCACGUCGc -3'
miRNA:   3'- -ACUCGGGGUCGCUGCGGUCGUGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 113052 0.68 0.559688
Target:  5'- aGcAGCCgCAGCG-CGUCGgcGCACGUCu -3'
miRNA:   3'- aC-UCGGgGUCGCuGCGGU--CGUGCAGc -5'
6369 5' -60.7 NC_001847.1 + 113026 0.66 0.649269
Target:  5'- cGGGCCCagGGCG-CGCCcGC-UGUCGc -3'
miRNA:   3'- aCUCGGGg-UCGCuGCGGuCGuGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 113013 0.72 0.355223
Target:  5'- uUGcGCUCCAGC-ACGCCGccGCGCGUCu -3'
miRNA:   3'- -ACuCGGGGUCGcUGCGGU--CGUGCAGc -5'
6369 5' -60.7 NC_001847.1 + 112864 0.68 0.540148
Target:  5'- -cGGCCUCGGCGGCGCUgccuacGGCGC-UCa -3'
miRNA:   3'- acUCGGGGUCGCUGCGG------UCGUGcAGc -5'
6369 5' -60.7 NC_001847.1 + 111408 0.66 0.649269
Target:  5'- -aGGCCCCgccaggGGCGGCGCuCGGC-CGggggCGg -3'
miRNA:   3'- acUCGGGG------UCGCUGCG-GUCGuGCa---GC- -5'
6369 5' -60.7 NC_001847.1 + 111251 0.66 0.669219
Target:  5'- cGGGUCggaGGCGGCGCCGGguCGgaggCGg -3'
miRNA:   3'- aCUCGGgg-UCGCUGCGGUCguGCa---GC- -5'
6369 5' -60.7 NC_001847.1 + 109439 0.68 0.57942
Target:  5'- cGGGCCgCAGUGGCGgCu-UACGUCGg -3'
miRNA:   3'- aCUCGGgGUCGCUGCgGucGUGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 108051 0.68 0.559688
Target:  5'- cGA-CCUCGGCGACGCCuccagcgugGGCGCGg-- -3'
miRNA:   3'- aCUcGGGGUCGCUGCGG---------UCGUGCagc -5'
6369 5' -60.7 NC_001847.1 + 107357 0.67 0.589344
Target:  5'- -uGGCCCCcGCGuCuCCGGCGcCGUCGu -3'
miRNA:   3'- acUCGGGGuCGCuGcGGUCGU-GCAGC- -5'
6369 5' -60.7 NC_001847.1 + 106708 0.66 0.689054
Target:  5'- cGGcGCCgCGGCGuaGCCAGCGCGggCGc -3'
miRNA:   3'- aCU-CGGgGUCGCugCGGUCGUGCa-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.