miRNA display CGI


Results 81 - 100 of 506 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6369 5' -60.7 NC_001847.1 + 106678 0.77 0.159775
Target:  5'- cGGGCCcuCCAGCGGCGgCGGCcCGUCGc -3'
miRNA:   3'- aCUCGG--GGUCGCUGCgGUCGuGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 106652 0.69 0.483094
Target:  5'- cGcGCUagCGGCGGCGCCgcggcguccgcGGCGCGUCGu -3'
miRNA:   3'- aCuCGGg-GUCGCUGCGG-----------UCGUGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 106524 0.72 0.332669
Target:  5'- cGGGCCCC-GCGGcCGCCgcguAGCGCG-CGg -3'
miRNA:   3'- aCUCGGGGuCGCU-GCGG----UCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 106450 0.7 0.429103
Target:  5'- gGGGUCCCgguaggccAGCGcCGCCGauacgcGCACGUCGu -3'
miRNA:   3'- aCUCGGGG--------UCGCuGCGGU------CGUGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 106280 0.75 0.230311
Target:  5'- --cGCCCCAGCGcCGCCGGCGuCG-CGc -3'
miRNA:   3'- acuCGGGGUCGCuGCGGUCGU-GCaGC- -5'
6369 5' -60.7 NC_001847.1 + 106131 0.68 0.530463
Target:  5'- cUGGGCgCgaUAGCuGCGCCAGCACGgcgCGc -3'
miRNA:   3'- -ACUCGgG--GUCGcUGCGGUCGUGCa--GC- -5'
6369 5' -60.7 NC_001847.1 + 105955 0.8 0.11216
Target:  5'- -cAGCCCCAGCaACGgCAGCACGUCc -3'
miRNA:   3'- acUCGGGGUCGcUGCgGUCGUGCAGc -5'
6369 5' -60.7 NC_001847.1 + 105954 0.78 0.148237
Target:  5'- gGAG-CCCGGCGGCGCCGGCgGCG-CGg -3'
miRNA:   3'- aCUCgGGGUCGCUGCGGUCG-UGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 105873 0.73 0.297457
Target:  5'- cGcGCUCCGgguGCGcCGCCAGCGCGUCc -3'
miRNA:   3'- aCuCGGGGU---CGCuGCGGUCGUGCAGc -5'
6369 5' -60.7 NC_001847.1 + 105732 0.66 0.659255
Target:  5'- gGGGCCacgguCC-GCGcCGCCAGCGCGg-- -3'
miRNA:   3'- aCUCGG-----GGuCGCuGCGGUCGUGCagc -5'
6369 5' -60.7 NC_001847.1 + 105718 0.72 0.332669
Target:  5'- --cGCCCCAGCGcuCGCUGGCGCG-Ca -3'
miRNA:   3'- acuCGGGGUCGCu-GCGGUCGUGCaGc -5'
6369 5' -60.7 NC_001847.1 + 105656 0.66 0.689054
Target:  5'- cGGGCUgaaCAGCGcgcGCGCCAGCGCc--- -3'
miRNA:   3'- aCUCGGg--GUCGC---UGCGGUCGUGcagc -5'
6369 5' -60.7 NC_001847.1 + 105625 0.71 0.362977
Target:  5'- -cGGCCgCCAGCcGCGCCGGCACcUCc -3'
miRNA:   3'- acUCGG-GGUCGcUGCGGUCGUGcAGc -5'
6369 5' -60.7 NC_001847.1 + 105557 0.73 0.311185
Target:  5'- -cGGCCCCcggcccggcgcGGCGGCGCCGGCGCcggCGc -3'
miRNA:   3'- acUCGGGG-----------UCGCUGCGGUCGUGca-GC- -5'
6369 5' -60.7 NC_001847.1 + 105239 0.71 0.395147
Target:  5'- gGGGCCCCccGCGGCgGCCGGCAgGg-- -3'
miRNA:   3'- aCUCGGGGu-CGCUG-CGGUCGUgCagc -5'
6369 5' -60.7 NC_001847.1 + 105158 0.69 0.520842
Target:  5'- -cGGCUCCcGCcGCGCCGGCccggccGCGUCGg -3'
miRNA:   3'- acUCGGGGuCGcUGCGGUCG------UGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 105129 0.73 0.297457
Target:  5'- aUGGGCCCCAGC-ACGCgGGCGgGcagCGg -3'
miRNA:   3'- -ACUCGGGGUCGcUGCGgUCGUgCa--GC- -5'
6369 5' -60.7 NC_001847.1 + 105077 0.66 0.698908
Target:  5'- -cAGCacuCCCAGCcgcgccaccGCGCCGGCaACGUCGc -3'
miRNA:   3'- acUCG---GGGUCGc--------UGCGGUCG-UGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 105000 0.71 0.378833
Target:  5'- aGGGCgCaCGGCG-CGCC-GCGCGUCGc -3'
miRNA:   3'- aCUCGgG-GUCGCuGCGGuCGUGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 104941 0.67 0.629267
Target:  5'- -cGGCUUCGGCGcgcGCGCCGcGCaccGCGUCGg -3'
miRNA:   3'- acUCGGGGUCGC---UGCGGU-CG---UGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.