Results 101 - 120 of 506 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6369 | 5' | -60.7 | NC_001847.1 | + | 104909 | 0.71 | 0.392671 |
Target: 5'- gGGGCCCgcgCGGCGGCgggccgcgaucucgGCCAGCGCcUCGg -3' miRNA: 3'- aCUCGGG---GUCGCUG--------------CGGUCGUGcAGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 104789 | 0.66 | 0.669219 |
Target: 5'- aGGGCCcgCCAGCaACGCgCGGUgcuCGUCGu -3' miRNA: 3'- aCUCGG--GGUCGcUGCG-GUCGu--GCAGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 104738 | 0.75 | 0.214364 |
Target: 5'- cGAGCUugCCGGCGgccaGCGCCAGCGcCGUCu -3' miRNA: 3'- aCUCGG--GGUCGC----UGCGGUCGU-GCAGc -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 104732 | 0.67 | 0.589344 |
Target: 5'- aGAGCCCgccgcggcgCGGCGGCcacucgggccGCCGGCGC-UCGu -3' miRNA: 3'- aCUCGGG---------GUCGCUG----------CGGUCGUGcAGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 104704 | 0.68 | 0.540148 |
Target: 5'- -cGGUugCCCAGCGcCGCgAGCGCGUgCGa -3' miRNA: 3'- acUCG--GGGUCGCuGCGgUCGUGCA-GC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 104612 | 0.71 | 0.411909 |
Target: 5'- cGAG-CUCGGCGAcgucgcgcuCGCCGGCACuGUCGu -3' miRNA: 3'- aCUCgGGGUCGCU---------GCGGUCGUG-CAGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 104382 | 0.73 | 0.297457 |
Target: 5'- cGAgGCCagcaCGGCGcGCGCCAGCGCGcCGc -3' miRNA: 3'- aCU-CGGg---GUCGC-UGCGGUCGUGCaGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 104297 | 0.68 | 0.544038 |
Target: 5'- aGAGCCgCAGCGGCGgCGccucgggguagagccGCGCGUa- -3' miRNA: 3'- aCUCGGgGUCGCUGCgGU---------------CGUGCAgc -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 104250 | 0.72 | 0.325389 |
Target: 5'- cGGGCCCaggcGCGugGCCAccguguagcGCACGUUGc -3' miRNA: 3'- aCUCGGGgu--CGCugCGGU---------CGUGCAGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 104147 | 0.79 | 0.118044 |
Target: 5'- cGAGCCCCAGCGccGCGCCcuGCGCGg-- -3' miRNA: 3'- aCUCGGGGUCGC--UGCGGu-CGUGCagc -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 104084 | 0.7 | 0.429103 |
Target: 5'- cGAGCCCCcagcgguuGGCGGCGCgguGGCugGcCGc -3' miRNA: 3'- aCUCGGGG--------UCGCUGCGg--UCGugCaGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 103937 | 0.67 | 0.589344 |
Target: 5'- -cGGCCUCcagcaccagcGGCGGCGCCucGGCGCG-CGg -3' miRNA: 3'- acUCGGGG----------UCGCUGCGG--UCGUGCaGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 103710 | 0.66 | 0.659255 |
Target: 5'- gGGGCCgCC-GCGGcCGCCGGC-CGcCGc -3' miRNA: 3'- aCUCGG-GGuCGCU-GCGGUCGuGCaGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 103688 | 0.67 | 0.58835 |
Target: 5'- cGAcGCCCaUGGCGcccacgaucaccaGCGCCAGCgACGUCc -3' miRNA: 3'- aCU-CGGG-GUCGC-------------UGCGGUCG-UGCAGc -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 103591 | 0.68 | 0.583386 |
Target: 5'- aGGGCCCuCGGgGgcaugcgcgcgacaaACGCCuggGGCACGUCc -3' miRNA: 3'- aCUCGGG-GUCgC---------------UGCGG---UCGUGCAGc -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 103587 | 0.8 | 0.11216 |
Target: 5'- --cGCCgCCGGCGGCGCCGGCcuCGUCGu -3' miRNA: 3'- acuCGG-GGUCGCUGCGGUCGu-GCAGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 103561 | 0.66 | 0.649269 |
Target: 5'- cGGGCCCCccuagGGCGAgGCCGGCc----- -3' miRNA: 3'- aCUCGGGG-----UCGCUgCGGUCGugcagc -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 103188 | 0.66 | 0.679155 |
Target: 5'- --cGCCCC-GCG-CGCC-GCGCGcCGg -3' miRNA: 3'- acuCGGGGuCGCuGCGGuCGUGCaGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 103118 | 0.67 | 0.639271 |
Target: 5'- gGGGCuucCCCGcGCGAgcgcgggcCGCCGGCGCG-CGa -3' miRNA: 3'- aCUCG---GGGU-CGCU--------GCGGUCGUGCaGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 103086 | 0.66 | 0.679155 |
Target: 5'- cGAGCCCgGGgGcCGCCGagcccGCGCGggCGc -3' miRNA: 3'- aCUCGGGgUCgCuGCGGU-----CGUGCa-GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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