miRNA display CGI


Results 61 - 80 of 506 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6369 5' -60.7 NC_001847.1 + 25202 0.72 0.330473
Target:  5'- cGAGCCCCGcGCG-CgGCCGGCaaagagcaugaucgGCGUCGc -3'
miRNA:   3'- aCUCGGGGU-CGCuG-CGGUCG--------------UGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 61005 0.71 0.370847
Target:  5'- cGAgGCCgCCAuCGGCGCC-GCGCGUCa -3'
miRNA:   3'- aCU-CGG-GGUcGCUGCGGuCGUGCAGc -5'
6369 5' -60.7 NC_001847.1 + 68375 0.78 0.137462
Target:  5'- cGAGCCCCgaAGCGACGCCgagcgacacgaAGCAC-UCGg -3'
miRNA:   3'- aCUCGGGG--UCGCUGCGG-----------UCGUGcAGC- -5'
6369 5' -60.7 NC_001847.1 + 9725 0.76 0.180811
Target:  5'- cGGGuCCuCCGGCGGCGCCGGgGCaGUCGc -3'
miRNA:   3'- aCUC-GG-GGUCGCUGCGGUCgUG-CAGC- -5'
6369 5' -60.7 NC_001847.1 + 134893 0.76 0.204265
Target:  5'- cGGGCCCCuG-GGCGCCGG-GCGUCGg -3'
miRNA:   3'- aCUCGGGGuCgCUGCGGUCgUGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 95751 0.75 0.214364
Target:  5'- gGAGCCCgGcCGGCGCCGGCuccccgacgGCGUCGc -3'
miRNA:   3'- aCUCGGGgUcGCUGCGGUCG---------UGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 52603 0.74 0.259105
Target:  5'- cGAGCCCgCgGGCGGCGCCuuugacuucGGCGCGUgCGc -3'
miRNA:   3'- aCUCGGG-G-UCGCUGCGG---------UCGUGCA-GC- -5'
6369 5' -60.7 NC_001847.1 + 79735 0.74 0.270794
Target:  5'- uUGAuGCCCUugaacguGGCGAgCGCCAGCGCGaUCa -3'
miRNA:   3'- -ACU-CGGGG-------UCGCU-GCGGUCGUGC-AGc -5'
6369 5' -60.7 NC_001847.1 + 105129 0.73 0.297457
Target:  5'- aUGGGCCCCAGC-ACGCgGGCGgGcagCGg -3'
miRNA:   3'- -ACUCGGGGUCGcUGCGgUCGUgCa--GC- -5'
6369 5' -60.7 NC_001847.1 + 105557 0.73 0.311185
Target:  5'- -cGGCCCCcggcccggcgcGGCGGCGCCGGCGCcggCGc -3'
miRNA:   3'- acUCGGGG-----------UCGCUGCGGUCGUGca-GC- -5'
6369 5' -60.7 NC_001847.1 + 99183 0.69 0.473861
Target:  5'- gGAGCCacagCAGCGcCGCCAGCAgCGcCc -3'
miRNA:   3'- aCUCGGg---GUCGCuGCGGUCGU-GCaGc -5'
6369 5' -60.7 NC_001847.1 + 42341 0.7 0.468364
Target:  5'- cGGcGCUCCAGCucggccacguccucgGugGCCAGCGCcUCGg -3'
miRNA:   3'- aCU-CGGGGUCG---------------CugCGGUCGUGcAGC- -5'
6369 5' -60.7 NC_001847.1 + 104909 0.71 0.392671
Target:  5'- gGGGCCCgcgCGGCGGCgggccgcgaucucgGCCAGCGCcUCGg -3'
miRNA:   3'- aCUCGGG---GUCGCUG--------------CGGUCGUGcAGC- -5'
6369 5' -60.7 NC_001847.1 + 100624 0.71 0.403473
Target:  5'- cGGGCCCUGGCGAcCGCCuGGCuGCGgCGc -3'
miRNA:   3'- aCUCGGGGUCGCU-GCGG-UCG-UGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 44829 0.7 0.420453
Target:  5'- -cGGCCCCGGCGGCcCCAccgaacGCGCGcUCGc -3'
miRNA:   3'- acUCGGGGUCGCUGcGGU------CGUGC-AGC- -5'
6369 5' -60.7 NC_001847.1 + 130518 0.7 0.429103
Target:  5'- cGAGCgCCGGCGggccgcccGCGCCgAGCugGcCGa -3'
miRNA:   3'- aCUCGgGGUCGC--------UGCGG-UCGugCaGC- -5'
6369 5' -60.7 NC_001847.1 + 133560 0.7 0.437857
Target:  5'- -uGGCCCgAGCGgcGCGCUGGCGCG-CGc -3'
miRNA:   3'- acUCGGGgUCGC--UGCGGUCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 49807 0.7 0.446713
Target:  5'- aGAGCCCUuuaacGCG-CGCCAGCGgGccaUCGg -3'
miRNA:   3'- aCUCGGGGu----CGCuGCGGUCGUgC---AGC- -5'
6369 5' -60.7 NC_001847.1 + 56827 0.7 0.455668
Target:  5'- cGGGCCCgCGGCGcgcGCGCCGcgccGCGcCGUCu -3'
miRNA:   3'- aCUCGGG-GUCGC---UGCGGU----CGU-GCAGc -5'
6369 5' -60.7 NC_001847.1 + 49906 0.7 0.463809
Target:  5'- cUGGGCCCggccgCGGUGGCGCUGcgcgugcGCACGUUGg -3'
miRNA:   3'- -ACUCGGG-----GUCGCUGCGGU-------CGUGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.