Results 81 - 100 of 506 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6369 | 5' | -60.7 | NC_001847.1 | + | 3416 | 0.71 | 0.403473 |
Target: 5'- aGAGCagCCCGGgGGCGCCAGgCGCagcccaggggGUCGa -3' miRNA: 3'- aCUCG--GGGUCgCUGCGGUC-GUG----------CAGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 4230 | 0.71 | 0.411909 |
Target: 5'- -cGGUgCCGGCGcGCGCCGGCACGa-- -3' miRNA: 3'- acUCGgGGUCGC-UGCGGUCGUGCagc -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 104084 | 0.7 | 0.429103 |
Target: 5'- cGAGCCCCcagcgguuGGCGGCGCgguGGCugGcCGc -3' miRNA: 3'- aCUCGGGG--------UCGCUGCGg--UCGugCaGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 101569 | 0.7 | 0.429103 |
Target: 5'- cGAGCCCgGGCcGCGCCAGacgcccccCGCGUgCGc -3' miRNA: 3'- aCUCGGGgUCGcUGCGGUC--------GUGCA-GC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 121756 | 0.7 | 0.437857 |
Target: 5'- cGGGCCCgCGGCG-CGCCcggacguGCGCGcCGu -3' miRNA: 3'- aCUCGGG-GUCGCuGCGGu------CGUGCaGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 56827 | 0.7 | 0.455668 |
Target: 5'- cGGGCCCgCGGCGcgcGCGCCGcgccGCGcCGUCu -3' miRNA: 3'- aCUCGGG-GUCGC---UGCGGU----CGU-GCAGc -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 49906 | 0.7 | 0.463809 |
Target: 5'- cUGGGCCCggccgCGGUGGCGCUGcgcgugcGCACGUUGg -3' miRNA: 3'- -ACUCGGG-----GUCGCUGCGGU-------CGUGCAGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 105557 | 0.73 | 0.311185 |
Target: 5'- -cGGCCCCcggcccggcgcGGCGGCGCCGGCGCcggCGc -3' miRNA: 3'- acUCGGGG-----------UCGCUGCGGUCGUGca-GC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 105129 | 0.73 | 0.297457 |
Target: 5'- aUGGGCCCCAGC-ACGCgGGCGgGcagCGg -3' miRNA: 3'- -ACUCGGGGUCGcUGCGgUCGUgCa--GC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 79735 | 0.74 | 0.270794 |
Target: 5'- uUGAuGCCCUugaacguGGCGAgCGCCAGCGCGaUCa -3' miRNA: 3'- -ACU-CGGGG-------UCGCU-GCGGUCGUGC-AGc -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 130481 | 0.69 | 0.483094 |
Target: 5'- -cGGCCCUgcuCGACG-CGGCGCGUCGg -3' miRNA: 3'- acUCGGGGuc-GCUGCgGUCGUGCAGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 1116 | 0.69 | 0.492412 |
Target: 5'- cGuGCCCCuGCGACGCUGGCGa---- -3' miRNA: 3'- aCuCGGGGuCGCUGCGGUCGUgcagc -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 115576 | 0.69 | 0.492412 |
Target: 5'- cGGGCCgCGGCGAuCGCgGGCGuCGaUCGc -3' miRNA: 3'- aCUCGGgGUCGCU-GCGgUCGU-GC-AGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 46589 | 0.69 | 0.501813 |
Target: 5'- cGGGCgUCAGCccCGCCGGCGCGgccucgCGg -3' miRNA: 3'- aCUCGgGGUCGcuGCGGUCGUGCa-----GC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 79973 | 0.69 | 0.511291 |
Target: 5'- -aAGCUCCAGCG-CGCCc-CGCGUCu -3' miRNA: 3'- acUCGGGGUCGCuGCGGucGUGCAGc -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 68375 | 0.78 | 0.137462 |
Target: 5'- cGAGCCCCgaAGCGACGCCgagcgacacgaAGCAC-UCGg -3' miRNA: 3'- aCUCGGGG--UCGCUGCGG-----------UCGUGcAGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 9725 | 0.76 | 0.180811 |
Target: 5'- cGGGuCCuCCGGCGGCGCCGGgGCaGUCGc -3' miRNA: 3'- aCUC-GG-GGUCGCUGCGGUCgUG-CAGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 134893 | 0.76 | 0.204265 |
Target: 5'- cGGGCCCCuG-GGCGCCGG-GCGUCGg -3' miRNA: 3'- aCUCGGGGuCgCUGCGGUCgUGCAGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 95751 | 0.75 | 0.214364 |
Target: 5'- gGAGCCCgGcCGGCGCCGGCuccccgacgGCGUCGc -3' miRNA: 3'- aCUCGGGgUcGCUGCGGUCG---------UGCAGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 52603 | 0.74 | 0.259105 |
Target: 5'- cGAGCCCgCgGGCGGCGCCuuugacuucGGCGCGUgCGc -3' miRNA: 3'- aCUCGGG-G-UCGCUGCGG---------UCGUGCA-GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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