Results 101 - 120 of 506 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6369 | 5' | -60.7 | NC_001847.1 | + | 3979 | 0.69 | 0.501813 |
Target: 5'- gUGGGCCgUgAGC-ACGCCAGCGCGg-- -3' miRNA: 3'- -ACUCGG-GgUCGcUGCGGUCGUGCagc -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 130951 | 0.69 | 0.520842 |
Target: 5'- uUGGGCCCgaggacugCAGCGACGCCGGguCc--- -3' miRNA: 3'- -ACUCGGG--------GUCGCUGCGGUCguGcagc -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 47710 | 0.69 | 0.520842 |
Target: 5'- -cGGCCgCCGG-GaACGCCAGCcCGUCGc -3' miRNA: 3'- acUCGG-GGUCgC-UGCGGUCGuGCAGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 105158 | 0.69 | 0.520842 |
Target: 5'- -cGGCUCCcGCcGCGCCGGCccggccGCGUCGg -3' miRNA: 3'- acUCGGGGuCGcUGCGGUCG------UGCAGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 49041 | 0.68 | 0.530463 |
Target: 5'- cGAGCCgUGGUGGCGCgCAGCucACGgccgCGg -3' miRNA: 3'- aCUCGGgGUCGCUGCG-GUCG--UGCa---GC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 101569 | 0.7 | 0.429103 |
Target: 5'- cGAGCCCgGGCcGCGCCAGacgcccccCGCGUgCGc -3' miRNA: 3'- aCUCGGGgUCGcUGCGGUC--------GUGCA-GC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 104084 | 0.7 | 0.429103 |
Target: 5'- cGAGCCCCcagcgguuGGCGGCGCgguGGCugGcCGc -3' miRNA: 3'- aCUCGGGG--------UCGCUGCGg--UCGugCaGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 68375 | 0.78 | 0.137462 |
Target: 5'- cGAGCCCCgaAGCGACGCCgagcgacacgaAGCAC-UCGg -3' miRNA: 3'- aCUCGGGG--UCGCUGCGG-----------UCGUGcAGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 9725 | 0.76 | 0.180811 |
Target: 5'- cGGGuCCuCCGGCGGCGCCGGgGCaGUCGc -3' miRNA: 3'- aCUC-GG-GGUCGCUGCGGUCgUG-CAGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 134893 | 0.76 | 0.204265 |
Target: 5'- cGGGCCCCuG-GGCGCCGG-GCGUCGg -3' miRNA: 3'- aCUCGGGGuCgCUGCGGUCgUGCAGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 95751 | 0.75 | 0.214364 |
Target: 5'- gGAGCCCgGcCGGCGCCGGCuccccgacgGCGUCGc -3' miRNA: 3'- aCUCGGGgUcGCUGCGGUCG---------UGCAGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 52603 | 0.74 | 0.259105 |
Target: 5'- cGAGCCCgCgGGCGGCGCCuuugacuucGGCGCGUgCGc -3' miRNA: 3'- aCUCGGG-G-UCGCUGCGG---------UCGUGCA-GC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 79735 | 0.74 | 0.270794 |
Target: 5'- uUGAuGCCCUugaacguGGCGAgCGCCAGCGCGaUCa -3' miRNA: 3'- -ACU-CGGGG-------UCGCU-GCGGUCGUGC-AGc -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 105129 | 0.73 | 0.297457 |
Target: 5'- aUGGGCCCCAGC-ACGCgGGCGgGcagCGg -3' miRNA: 3'- -ACUCGGGGUCGcUGCGgUCGUgCa--GC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 105557 | 0.73 | 0.311185 |
Target: 5'- -cGGCCCCcggcccggcgcGGCGGCGCCGGCGCcggCGc -3' miRNA: 3'- acUCGGGG-----------UCGCUGCGGUCGUGca-GC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 106524 | 0.72 | 0.332669 |
Target: 5'- cGGGCCCC-GCGGcCGCCgcguAGCGCG-CGg -3' miRNA: 3'- aCUCGGGGuCGCU-GCGG----UCGUGCaGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 105625 | 0.71 | 0.362977 |
Target: 5'- -cGGCCgCCAGCcGCGCCGGCACcUCc -3' miRNA: 3'- acUCGG-GGUCGcUGCGGUCGUGcAGc -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 55506 | 0.71 | 0.386933 |
Target: 5'- gUGGGCCCUgcugcuGGCGGCGCCcGcCGCGgggCGa -3' miRNA: 3'- -ACUCGGGG------UCGCUGCGGuC-GUGCa--GC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 3416 | 0.71 | 0.403473 |
Target: 5'- aGAGCagCCCGGgGGCGCCAGgCGCagcccaggggGUCGa -3' miRNA: 3'- aCUCG--GGGUCgCUGCGGUC-GUG----------CAGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 4230 | 0.71 | 0.411909 |
Target: 5'- -cGGUgCCGGCGcGCGCCGGCACGa-- -3' miRNA: 3'- acUCGgGGUCGC-UGCGGUCGUGCagc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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