miRNA display CGI


Results 41 - 60 of 506 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6369 5' -60.7 NC_001847.1 + 29091 0.66 0.698908
Target:  5'- --uGCCgCCGGCGA-GCaCGGCGCGggCGg -3'
miRNA:   3'- acuCGG-GGUCGCUgCG-GUCGUGCa-GC- -5'
6369 5' -60.7 NC_001847.1 + 66057 0.66 0.698908
Target:  5'- --cGUCCgCGcGCGGCGCCAGaCGCGgCGa -3'
miRNA:   3'- acuCGGG-GU-CGCUGCGGUC-GUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 82127 0.66 0.698908
Target:  5'- cGAGCgCgCAGCGGcCGCC-GC-UGUCGg -3'
miRNA:   3'- aCUCGgG-GUCGCU-GCGGuCGuGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 91814 0.66 0.698908
Target:  5'- cGcGCCgCgCGGCGAUGgCAGCACGgcagCGc -3'
miRNA:   3'- aCuCGG-G-GUCGCUGCgGUCGUGCa---GC- -5'
6369 5' -60.7 NC_001847.1 + 105077 0.66 0.698908
Target:  5'- -cAGCacuCCCAGCcgcgccaccGCGCCGGCaACGUCGc -3'
miRNA:   3'- acUCG---GGGUCGc--------UGCGGUCG-UGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 45348 0.66 0.689054
Target:  5'- --uGCCaCGGCGuuCGCCAGCGCGa-- -3'
miRNA:   3'- acuCGGgGUCGCu-GCGGUCGUGCagc -5'
6369 5' -60.7 NC_001847.1 + 37971 0.66 0.689054
Target:  5'- -uGGCCCgCGuGCG-CGCCGGCAgUGUCu -3'
miRNA:   3'- acUCGGG-GU-CGCuGCGGUCGU-GCAGc -5'
6369 5' -60.7 NC_001847.1 + 80558 0.66 0.679155
Target:  5'- cGcGCCgCCAGCGcCGCCcagcccgcggGGC-CGUCGu -3'
miRNA:   3'- aCuCGG-GGUCGCuGCGG----------UCGuGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 375 0.66 0.679155
Target:  5'- --cGCCCC-GCG-CGCC-GCGCGcCGg -3'
miRNA:   3'- acuCGGGGuCGCuGCGGuCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 97431 0.66 0.686089
Target:  5'- cGGcGCgCCCAGCagcagcgcgcacguGACGagguCCAGCGCGUUGa -3'
miRNA:   3'- aCU-CG-GGGUCG--------------CUGC----GGUCGUGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 120961 0.66 0.689054
Target:  5'- gUGGGCggaCCCAGCGcCGCguaAGCGCGg-- -3'
miRNA:   3'- -ACUCG---GGGUCGCuGCGg--UCGUGCagc -5'
6369 5' -60.7 NC_001847.1 + 12014 0.66 0.689054
Target:  5'- -uGGCUCUGG-GGCGCCGGCGagGUCGu -3'
miRNA:   3'- acUCGGGGUCgCUGCGGUCGUg-CAGC- -5'
6369 5' -60.7 NC_001847.1 + 31282 0.66 0.689054
Target:  5'- aGGGCCCgCGGgaGACGCUcgugcugcugcGGCGCGcCGc -3'
miRNA:   3'- aCUCGGG-GUCg-CUGCGG-----------UCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 32327 0.66 0.689054
Target:  5'- gGGGCCCgC-GCGGCGC-GGCGCGg-- -3'
miRNA:   3'- aCUCGGG-GuCGCUGCGgUCGUGCagc -5'
6369 5' -60.7 NC_001847.1 + 98504 0.66 0.689054
Target:  5'- cGAGCa-CAGCGccacaGCCAGCuuGUCGc -3'
miRNA:   3'- aCUCGggGUCGCug---CGGUCGugCAGC- -5'
6369 5' -60.7 NC_001847.1 + 102095 0.66 0.689054
Target:  5'- aGcGCCUCGGC--CGCgAGCGCGUCc -3'
miRNA:   3'- aCuCGGGGUCGcuGCGgUCGUGCAGc -5'
6369 5' -60.7 NC_001847.1 + 114168 0.66 0.689054
Target:  5'- gGAGgCCUAGUGcgcGCGCCcGCuuauagGCGUCGa -3'
miRNA:   3'- aCUCgGGGUCGC---UGCGGuCG------UGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 129236 0.66 0.689054
Target:  5'- aUGGGCCCgGGCGcacaaucuGCGaCGGCGCGg-- -3'
miRNA:   3'- -ACUCGGGgUCGC--------UGCgGUCGUGCagc -5'
6369 5' -60.7 NC_001847.1 + 2843 0.66 0.689054
Target:  5'- cGGGCUgaaCAGCGcgcGCGCCAGCGCc--- -3'
miRNA:   3'- aCUCGGg--GUCGC---UGCGGUCGUGcagc -5'
6369 5' -60.7 NC_001847.1 + 3895 0.66 0.689054
Target:  5'- cGGcGCCgCGGCGuaGCCAGCGCGggCGc -3'
miRNA:   3'- aCU-CGGgGUCGCugCGGUCGUGCa-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.