Results 81 - 100 of 506 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6369 | 5' | -60.7 | NC_001847.1 | + | 118782 | 0.66 | 0.669219 |
Target: 5'- gUGAGCggcaCCGGCaGcCGCCAGCGCcUCc -3' miRNA: 3'- -ACUCGg---GGUCG-CuGCGGUCGUGcAGc -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 104789 | 0.66 | 0.669219 |
Target: 5'- aGGGCCcgCCAGCaACGCgCGGUgcuCGUCGu -3' miRNA: 3'- aCUCGG--GGUCGcUGCG-GUCGu--GCAGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 51961 | 0.66 | 0.659255 |
Target: 5'- cGcGCCCCccgcCGucCGCCAGCcCGUCGg -3' miRNA: 3'- aCuCGGGGuc--GCu-GCGGUCGuGCAGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 44189 | 0.66 | 0.659255 |
Target: 5'- -cAGCCCCuuCGAgaGCCAGCugGUg- -3' miRNA: 3'- acUCGGGGucGCUg-CGGUCGugCAgc -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 34366 | 0.66 | 0.659255 |
Target: 5'- aGAGaaggCCAGCGAgCGCCAugGCGCGgggCGa -3' miRNA: 3'- aCUCgg--GGUCGCU-GCGGU--CGUGCa--GC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 897 | 0.66 | 0.659255 |
Target: 5'- gGGGCCgCC-GCGGcCGCCGGC-CGcCGc -3' miRNA: 3'- aCUCGG-GGuCGCU-GCGGUCGuGCaGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 2919 | 0.66 | 0.659255 |
Target: 5'- gGGGCCacgguCC-GCGcCGCCAGCGCGg-- -3' miRNA: 3'- aCUCGG-----GGuCGCuGCGGUCGUGCagc -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 133245 | 0.66 | 0.676178 |
Target: 5'- --uGCCCCGcaucguacauguucGUGAUGUUGGCGCGUCu -3' miRNA: 3'- acuCGGGGU--------------CGCUGCGGUCGUGCAGc -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 71848 | 0.66 | 0.678163 |
Target: 5'- aGAGCacgccucCCCAGCGGuggaagcggcCGCgAGCGCG-CGg -3' miRNA: 3'- aCUCG-------GGGUCGCU----------GCGgUCGUGCaGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 273 | 0.66 | 0.679155 |
Target: 5'- cGAGCCCgGGgGcCGCCGagcccGCGCGggCGc -3' miRNA: 3'- aCUCGGGgUCgCuGCGGU-----CGUGCa-GC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 375 | 0.66 | 0.679155 |
Target: 5'- --cGCCCC-GCG-CGCC-GCGCGcCGg -3' miRNA: 3'- acuCGGGGuCGCuGCGGuCGUGCaGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 80558 | 0.66 | 0.679155 |
Target: 5'- cGcGCCgCCAGCGcCGCCcagcccgcggGGC-CGUCGu -3' miRNA: 3'- aCuCGG-GGUCGCuGCGG----------UCGuGCAGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 127374 | 0.66 | 0.679155 |
Target: 5'- cGAGCCUCGGC-ACcaaCGGC-CGUCGg -3' miRNA: 3'- aCUCGGGGUCGcUGcg-GUCGuGCAGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 57418 | 0.66 | 0.679155 |
Target: 5'- cGGGCCUCGcacGCG-CGCCAaGCGCG-Ca -3' miRNA: 3'- aCUCGGGGU---CGCuGCGGU-CGUGCaGc -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 90885 | 0.66 | 0.679155 |
Target: 5'- gGGGCCguugcCCAGU--CGCCGGCGCGcUCa -3' miRNA: 3'- aCUCGG-----GGUCGcuGCGGUCGUGC-AGc -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 73237 | 0.66 | 0.679155 |
Target: 5'- gGGGC---GGCGGCGCgGGCGCGcUCGa -3' miRNA: 3'- aCUCGgggUCGCUGCGgUCGUGC-AGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 48631 | 0.66 | 0.679155 |
Target: 5'- nGGGCgCCCAGC--CGCC-GCGCGaCGg -3' miRNA: 3'- aCUCG-GGGUCGcuGCGGuCGUGCaGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 28178 | 0.66 | 0.679155 |
Target: 5'- cGGGCCCgaggacugCAGCGAUGCCGGgCcCGagGa -3' miRNA: 3'- aCUCGGG--------GUCGCUGCGGUC-GuGCagC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 986 | 0.66 | 0.679155 |
Target: 5'- gGGGCuUCCGccGCGGCGgCGGCACG-CGc -3' miRNA: 3'- aCUCG-GGGU--CGCUGCgGUCGUGCaGC- -5' |
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6369 | 5' | -60.7 | NC_001847.1 | + | 80508 | 0.66 | 0.659255 |
Target: 5'- aGAGCCgCuCGGCauaGCGCUGucggcGCACGUCGg -3' miRNA: 3'- aCUCGG-G-GUCGc--UGCGGU-----CGUGCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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