miRNA display CGI


Results 21 - 40 of 506 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6369 5' -60.7 NC_001847.1 + 28490 0.66 0.689054
Target:  5'- gGAcGCCgCGGCGccgcCGCUAGCGCG-CGc -3'
miRNA:   3'- aCU-CGGgGUCGCu---GCGGUCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 27193 0.66 0.689054
Target:  5'- gGuGCUUCAGCGuuaggacgggcGCGCCGGgGCGcUCGa -3'
miRNA:   3'- aCuCGGGGUCGC-----------UGCGGUCgUGC-AGC- -5'
6369 5' -60.7 NC_001847.1 + 89349 0.66 0.689054
Target:  5'- aGuAGUCUCGGCcgccGACGCCGGCGcCGUgCGc -3'
miRNA:   3'- aC-UCGGGGUCG----CUGCGGUCGU-GCA-GC- -5'
6369 5' -60.7 NC_001847.1 + 45291 0.66 0.689054
Target:  5'- cGAGCCggccuugcagCCGGCGGuCGCaGGCGCG-CGu -3'
miRNA:   3'- aCUCGG----------GGUCGCU-GCGgUCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 75630 0.66 0.689054
Target:  5'- --cGCCCCacgacGGCGAUGCCggagccggaGGCGCGggCGu -3'
miRNA:   3'- acuCGGGG-----UCGCUGCGG---------UCGUGCa-GC- -5'
6369 5' -60.7 NC_001847.1 + 91542 0.66 0.689054
Target:  5'- nGAGCCCUcaaggGGC-ACGCCcAGCGuaagucCGUCGu -3'
miRNA:   3'- aCUCGGGG-----UCGcUGCGG-UCGU------GCAGC- -5'
6369 5' -60.7 NC_001847.1 + 120961 0.66 0.689054
Target:  5'- gUGGGCggaCCCAGCGcCGCguaAGCGCGg-- -3'
miRNA:   3'- -ACUCG---GGGUCGCuGCGg--UCGUGCagc -5'
6369 5' -60.7 NC_001847.1 + 84766 0.66 0.689054
Target:  5'- -aAGCCggCGGCGGCGCCGuccuuaGCGUCGg -3'
miRNA:   3'- acUCGGg-GUCGCUGCGGUcg----UGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 80777 0.66 0.689054
Target:  5'- --cGCCgCAGCagcuCGCgCAGCGCGUCc -3'
miRNA:   3'- acuCGGgGUCGcu--GCG-GUCGUGCAGc -5'
6369 5' -60.7 NC_001847.1 + 65804 0.66 0.689054
Target:  5'- -cAGCaCCAGCGcCGCCAGCAgCGccCGa -3'
miRNA:   3'- acUCGgGGUCGCuGCGGUCGU-GCa-GC- -5'
6369 5' -60.7 NC_001847.1 + 55561 0.66 0.689054
Target:  5'- ---uUCCCGGaCGGCGCCcgcAGCACGaUCGu -3'
miRNA:   3'- acucGGGGUC-GCUGCGG---UCGUGC-AGC- -5'
6369 5' -60.7 NC_001847.1 + 45348 0.66 0.689054
Target:  5'- --uGCCaCGGCGuuCGCCAGCGCGa-- -3'
miRNA:   3'- acuCGGgGUCGCu-GCGGUCGUGCagc -5'
6369 5' -60.7 NC_001847.1 + 2843 0.66 0.689054
Target:  5'- cGGGCUgaaCAGCGcgcGCGCCAGCGCc--- -3'
miRNA:   3'- aCUCGGg--GUCGC---UGCGGUCGUGcagc -5'
6369 5' -60.7 NC_001847.1 + 129236 0.66 0.689054
Target:  5'- aUGGGCCCgGGCGcacaaucuGCGaCGGCGCGg-- -3'
miRNA:   3'- -ACUCGGGgUCGC--------UGCgGUCGUGCagc -5'
6369 5' -60.7 NC_001847.1 + 114168 0.66 0.689054
Target:  5'- gGAGgCCUAGUGcgcGCGCCcGCuuauagGCGUCGa -3'
miRNA:   3'- aCUCgGGGUCGC---UGCGGuCG------UGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 102095 0.66 0.689054
Target:  5'- aGcGCCUCGGC--CGCgAGCGCGUCc -3'
miRNA:   3'- aCuCGGGGUCGcuGCGgUCGUGCAGc -5'
6369 5' -60.7 NC_001847.1 + 98504 0.66 0.689054
Target:  5'- cGAGCa-CAGCGccacaGCCAGCuuGUCGc -3'
miRNA:   3'- aCUCGggGUCGCug---CGGUCGugCAGC- -5'
6369 5' -60.7 NC_001847.1 + 32327 0.66 0.689054
Target:  5'- gGGGCCCgC-GCGGCGC-GGCGCGg-- -3'
miRNA:   3'- aCUCGGG-GuCGCUGCGgUCGUGCagc -5'
6369 5' -60.7 NC_001847.1 + 31282 0.66 0.689054
Target:  5'- aGGGCCCgCGGgaGACGCUcgugcugcugcGGCGCGcCGc -3'
miRNA:   3'- aCUCGGG-GUCg-CUGCGG-----------UCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 12014 0.66 0.689054
Target:  5'- -uGGCUCUGG-GGCGCCGGCGagGUCGu -3'
miRNA:   3'- acUCGGGGUCgCUGCGGUCGUg-CAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.