Results 1 - 9 of 9 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
637 | 3' | -58.8 | AC_000017.1 | + | 25955 | 0.66 | 0.335458 |
Target: 5'- --aCCCCGgAGCCGCGGACUUUuCg- -3' miRNA: 3'- aaaGGGGCgUUGGCGUCUGGGAcGau -5' |
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637 | 3' | -58.8 | AC_000017.1 | + | 16229 | 0.66 | 0.327138 |
Target: 5'- --gCCCaacgCGCGGCgGCGG-CCCUGCUu -3' miRNA: 3'- aaaGGG----GCGUUGgCGUCuGGGACGAu -5' |
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637 | 3' | -58.8 | AC_000017.1 | + | 18613 | 0.66 | 0.327138 |
Target: 5'- ---aCCCGCccuAGCCGCGcGuCCCUGCg- -3' miRNA: 3'- aaagGGGCG---UUGGCGU-CuGGGACGau -5' |
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637 | 3' | -58.8 | AC_000017.1 | + | 12821 | 0.67 | 0.280448 |
Target: 5'- -gUCCCCGCGGCacguugGCGGGCUgUGUa- -3' miRNA: 3'- aaAGGGGCGUUGg-----CGUCUGGgACGau -5' |
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637 | 3' | -58.8 | AC_000017.1 | + | 11198 | 0.68 | 0.273201 |
Target: 5'- --cCCCCGCGGCgC-CGGGCCCgGCa- -3' miRNA: 3'- aaaGGGGCGUUG-GcGUCUGGGaCGau -5' |
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637 | 3' | -58.8 | AC_000017.1 | + | 5602 | 0.69 | 0.226634 |
Target: 5'- ---aUCCGC-GCCGCAGGCCCcGCa- -3' miRNA: 3'- aaagGGGCGuUGGCGUCUGGGaCGau -5' |
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637 | 3' | -58.8 | AC_000017.1 | + | 3369 | 0.73 | 0.111874 |
Target: 5'- ---aCCCGCAccaGgUGCAGACCCUGCg- -3' miRNA: 3'- aaagGGGCGU---UgGCGUCUGGGACGau -5' |
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637 | 3' | -58.8 | AC_000017.1 | + | 26188 | 0.73 | 0.105225 |
Target: 5'- --gCCCUaucagcaGCAGCCGCGGGCCCUuGCUu -3' miRNA: 3'- aaaGGGG-------CGUUGGCGUCUGGGA-CGAu -5' |
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637 | 3' | -58.8 | AC_000017.1 | + | 13571 | 1.04 | 0.000401 |
Target: 5'- uUUUCCCCGCAACCGCAGACCCUGCUAg -3' miRNA: 3'- -AAAGGGGCGUUGGCGUCUGGGACGAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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