Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
637 | 5' | -59.1 | AC_000017.1 | + | 2177 | 0.68 | 0.261637 |
Target: 5'- cAGCAGGaggaAGccAGGCGGCGgCgGCGgcAGg -3' miRNA: 3'- -UCGUCCg---UC--UCCGCCGC-GaCGCuuUC- -5' |
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637 | 5' | -59.1 | AC_000017.1 | + | 3872 | 0.66 | 0.342497 |
Target: 5'- cGCGGGCGGuGGCuGCaGCggcugaagcggcgGCGGAGGc -3' miRNA: 3'- uCGUCCGUCuCCGcCG-CGa------------CGCUUUC- -5' |
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637 | 5' | -59.1 | AC_000017.1 | + | 5237 | 0.67 | 0.297686 |
Target: 5'- cGCGGGUuGGGGCGGCuuucGCUGUa---- -3' miRNA: 3'- uCGUCCGuCUCCGCCG----CGACGcuuuc -5' |
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637 | 5' | -59.1 | AC_000017.1 | + | 6481 | 0.68 | 0.278478 |
Target: 5'- cGUAGGCgcucguugguccagcAGAGGCGGCcGCccuUGCGcGAGc -3' miRNA: 3'- uCGUCCG---------------UCUCCGCCG-CG---ACGCuUUC- -5' |
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637 | 5' | -59.1 | AC_000017.1 | + | 8541 | 0.66 | 0.354435 |
Target: 5'- cGCGcGGCGGGcGGUGG-GCcGCGggGGu -3' miRNA: 3'- uCGU-CCGUCU-CCGCCgCGaCGCuuUC- -5' |
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637 | 5' | -59.1 | AC_000017.1 | + | 8645 | 0.69 | 0.235421 |
Target: 5'- gAGgGGGCAGGGGCacgucGGCGCcGCGn--- -3' miRNA: 3'- -UCgUCCGUCUCCG-----CCGCGaCGCuuuc -5' |
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637 | 5' | -59.1 | AC_000017.1 | + | 8673 | 0.74 | 0.090632 |
Target: 5'- cGCGGGCAGGaGCuGGUGCUGCGcacGGAGg -3' miRNA: 3'- uCGUCCGUCUcCG-CCGCGACGC---UUUC- -5' |
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637 | 5' | -59.1 | AC_000017.1 | + | 9748 | 0.73 | 0.106917 |
Target: 5'- uGGCGGGCGGcagcGGGCGGCGgUcgggguuguuucugGCGGAGGu -3' miRNA: 3'- -UCGUCCGUC----UCCGCCGCgA--------------CGCUUUC- -5' |
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637 | 5' | -59.1 | AC_000017.1 | + | 10467 | 0.66 | 0.345878 |
Target: 5'- cGGC-GGCGGuGGUggaGGCGC-GCGGAAa -3' miRNA: 3'- -UCGuCCGUCuCCG---CCGCGaCGCUUUc -5' |
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637 | 5' | -59.1 | AC_000017.1 | + | 10787 | 0.66 | 0.337471 |
Target: 5'- -cCAGGCGc-GGCGGCuGCUGCGcuAGc -3' miRNA: 3'- ucGUCCGUcuCCGCCG-CGACGCuuUC- -5' |
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637 | 5' | -59.1 | AC_000017.1 | + | 11263 | 0.67 | 0.297686 |
Target: 5'- -cCAGGUAGugccGGGCccGGCGCcGCGggGGu -3' miRNA: 3'- ucGUCCGUC----UCCG--CCGCGaCGCuuUC- -5' |
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637 | 5' | -59.1 | AC_000017.1 | + | 12337 | 0.73 | 0.117565 |
Target: 5'- cGGCGGuGC--GGGCGGCGCUGC-AGAGc -3' miRNA: 3'- -UCGUC-CGucUCCGCCGCGACGcUUUC- -5' |
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637 | 5' | -59.1 | AC_000017.1 | + | 13613 | 1.09 | 0.000187 |
Target: 5'- gAGCAGGCAGAGGCGGCGCUGCGAAAGg -3' miRNA: 3'- -UCGUCCGUCUCCGCCGCGACGCUUUC- -5' |
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637 | 5' | -59.1 | AC_000017.1 | + | 13803 | 0.73 | 0.110999 |
Target: 5'- uAGCAGGCGcGGGCgGGUGgUGCGAGu- -3' miRNA: 3'- -UCGUCCGUcUCCG-CCGCgACGCUUuc -5' |
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637 | 5' | -59.1 | AC_000017.1 | + | 15055 | 0.74 | 0.098886 |
Target: 5'- --aGGGCGGGGGUGGCGCagGCGgcGGc -3' miRNA: 3'- ucgUCCGUCUCCGCCGCGa-CGCuuUC- -5' |
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637 | 5' | -59.1 | AC_000017.1 | + | 15283 | 0.66 | 0.363139 |
Target: 5'- cGCA-GCGGGGGCGGCaGCUuCGGc-- -3' miRNA: 3'- uCGUcCGUCUCCGCCG-CGAcGCUuuc -5' |
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637 | 5' | -59.1 | AC_000017.1 | + | 17279 | 0.74 | 0.104778 |
Target: 5'- cGguGGCAGAugccgcggugcaGGCGGcCGCUGCGGc-- -3' miRNA: 3'- uCguCCGUCU------------CCGCC-GCGACGCUuuc -5' |
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637 | 5' | -59.1 | AC_000017.1 | + | 19310 | 0.65 | 0.380082 |
Target: 5'- gAGgAGGCAGAGGaggaGGCagaagcaccacaaGCUGaucaGAAGGu -3' miRNA: 3'- -UCgUCCGUCUCCg---CCG-------------CGACg---CUUUC- -5' |
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637 | 5' | -59.1 | AC_000017.1 | + | 20813 | 0.7 | 0.194869 |
Target: 5'- aAGCAuGGCuucaagcguuGAGGCGGUGUUGUGGGc- -3' miRNA: 3'- -UCGU-CCGu---------CUCCGCCGCGACGCUUuc -5' |
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637 | 5' | -59.1 | AC_000017.1 | + | 23946 | 0.72 | 0.147595 |
Target: 5'- cGCGGGgGGcGGCGGCGacgGCGAcGGg -3' miRNA: 3'- uCGUCCgUCuCCGCCGCga-CGCUuUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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