miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6370 3' -54.6 NC_001847.1 + 33943 0.67 0.847688
Target:  5'- -uACCGCgagGcGCUGGAGAacCCGAGc--- -3'
miRNA:   3'- uuUGGCGa--C-CGACCUCU--GGCUCaaag -5'
6370 3' -54.6 NC_001847.1 + 132403 0.68 0.839342
Target:  5'- -cGCCGCgccgGGCcGGGGGCCG-GUg-- -3'
miRNA:   3'- uuUGGCGa---CCGaCCUCUGGCuCAaag -5'
6370 3' -54.6 NC_001847.1 + 74656 0.66 0.918636
Target:  5'- cAGCUGCUGcGcCUGGAGccgGCCGAGc--- -3'
miRNA:   3'- uUUGGCGAC-C-GACCUC---UGGCUCaaag -5'
6370 3' -54.6 NC_001847.1 + 7297 0.69 0.794765
Target:  5'- cGAGCCGCUGGCgcGGcgccugagcGGACCGAcgcuaUUUCg -3'
miRNA:   3'- -UUUGGCGACCGa-CC---------UCUGGCUc----AAAG- -5'
6370 3' -54.6 NC_001847.1 + 34810 0.7 0.715821
Target:  5'- cGGCCGCUGGCgcGGcAGGCCGAc---- -3'
miRNA:   3'- uUUGGCGACCGa-CC-UCUGGCUcaaag -5'
6370 3' -54.6 NC_001847.1 + 101144 0.66 0.906388
Target:  5'- uGGgCGCgggGGCUGG-GGCCGGGg--- -3'
miRNA:   3'- uUUgGCGa--CCGACCuCUGGCUCaaag -5'
6370 3' -54.6 NC_001847.1 + 134023 0.73 0.537749
Target:  5'- -cGCCGCUGGUgcUGGAGGCCGcGg--- -3'
miRNA:   3'- uuUGGCGACCG--ACCUCUGGCuCaaag -5'
6370 3' -54.6 NC_001847.1 + 37583 0.67 0.855825
Target:  5'- uGGCCGCUgcGGCUGcGGcGGCCGGGg--- -3'
miRNA:   3'- uUUGGCGA--CCGAC-CU-CUGGCUCaaag -5'
6370 3' -54.6 NC_001847.1 + 102669 0.66 0.899887
Target:  5'- cGGCCGCgagGGCgGGGGGgCGGGg--- -3'
miRNA:   3'- uUUGGCGa--CCGaCCUCUgGCUCaaag -5'
6370 3' -54.6 NC_001847.1 + 43843 0.66 0.918636
Target:  5'- ---gCGCUGGCgcugcUGGAGcCCGAGg--- -3'
miRNA:   3'- uuugGCGACCG-----ACCUCuGGCUCaaag -5'
6370 3' -54.6 NC_001847.1 + 93784 0.66 0.897888
Target:  5'- -cGCCGCuUGGCUGGuuccgcgcggccgcGcGGCCGAGUc-- -3'
miRNA:   3'- uuUGGCG-ACCGACC--------------U-CUGGCUCAaag -5'
6370 3' -54.6 NC_001847.1 + 50104 0.69 0.785342
Target:  5'- cGGCCaGCU-GCUGGGGGCCGGGc--- -3'
miRNA:   3'- uUUGG-CGAcCGACCUCUGGCUCaaag -5'
6370 3' -54.6 NC_001847.1 + 33859 0.74 0.467914
Target:  5'- gAGACCGCgGGCUGGGGGgCGGGc--- -3'
miRNA:   3'- -UUUGGCGaCCGACCUCUgGCUCaaag -5'
6370 3' -54.6 NC_001847.1 + 31210 0.73 0.537749
Target:  5'- -cGCCGCUGGUgcUGGAGGCCGcGg--- -3'
miRNA:   3'- uuUGGCGACCG--ACCUCUGGCuCaaag -5'
6370 3' -54.6 NC_001847.1 + 15391 0.73 0.568796
Target:  5'- --uCgGCgucggGGCUGG-GGCCGGGUUUCg -3'
miRNA:   3'- uuuGgCGa----CCGACCuCUGGCUCAAAG- -5'
6370 3' -54.6 NC_001847.1 + 29590 0.68 0.839342
Target:  5'- -cGCCGCgccgGGCcGGGGGCCG-GUg-- -3'
miRNA:   3'- uuUGGCGa---CCGaCCUCUGGCuCAaag -5'
6370 3' -54.6 NC_001847.1 + 108453 0.68 0.839342
Target:  5'- cGAGCUGC-GGCUGGAGcCCGccGGcgUCa -3'
miRNA:   3'- -UUUGGCGaCCGACCUCuGGC--UCaaAG- -5'
6370 3' -54.6 NC_001847.1 + 79538 0.67 0.878911
Target:  5'- -cGCCGUcggGGCcggGGGGGCUGGGgcUCg -3'
miRNA:   3'- uuUGGCGa--CCGa--CCUCUGGCUCaaAG- -5'
6370 3' -54.6 NC_001847.1 + 32684 0.67 0.886144
Target:  5'- -cGCCGgUGGCUGGAGGggcgcCCGAc---- -3'
miRNA:   3'- uuUGGCgACCGACCUCU-----GGCUcaaag -5'
6370 3' -54.6 NC_001847.1 + 33728 0.66 0.899887
Target:  5'- gGAGCCGC-GGCgGGAGAC-GAGa--- -3'
miRNA:   3'- -UUUGGCGaCCGaCCUCUGgCUCaaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.