miRNA display CGI


Results 21 - 40 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6370 5' -60.4 NC_001847.1 + 125280 0.66 0.701593
Target:  5'- gGCGGCaggaGCCGucgcAGGugGggcaaggcUGGcCGUGGCUCa -3'
miRNA:   3'- -UGCUG----CGGU----UCCugC--------ACC-GCGCCGAG- -5'
6370 5' -60.4 NC_001847.1 + 22467 0.66 0.701593
Target:  5'- gGCGGCaggaGCCGucgcAGGugGggcaaggcUGGcCGUGGCUCa -3'
miRNA:   3'- -UGCUG----CGGU----UCCugC--------ACC-GCGCCGAG- -5'
6370 5' -60.4 NC_001847.1 + 17834 0.66 0.695679
Target:  5'- uGCGGCGCacgucggcgaaacaGAGGuCGUcgGGCGCGGggCg -3'
miRNA:   3'- -UGCUGCGg-------------UUCCuGCA--CCGCGCCgaG- -5'
6370 5' -60.4 NC_001847.1 + 42951 0.66 0.691726
Target:  5'- cCGACGCCGcgcgcggggGGGGCG-GGCcGcCGGC-Cg -3'
miRNA:   3'- uGCUGCGGU---------UCCUGCaCCG-C-GCCGaG- -5'
6370 5' -60.4 NC_001847.1 + 98243 0.66 0.691726
Target:  5'- gGCGACGCC---GugGcGGCGgGGCa- -3'
miRNA:   3'- -UGCUGCGGuucCugCaCCGCgCCGag -5'
6370 5' -60.4 NC_001847.1 + 3893 0.66 0.691726
Target:  5'- cGCGGCGCCGcGGcguagccaGCGcgGGCGcCGGUUg -3'
miRNA:   3'- -UGCUGCGGUuCC--------UGCa-CCGC-GCCGAg -5'
6370 5' -60.4 NC_001847.1 + 106706 0.66 0.691726
Target:  5'- cGCGGCGCCGcGGcguagccaGCGcgGGCGcCGGUUg -3'
miRNA:   3'- -UGCUGCGGUuCC--------UGCa-CCGC-GCCGAg -5'
6370 5' -60.4 NC_001847.1 + 125205 0.66 0.691726
Target:  5'- -aGGCGCCcGGGcCGcGGCgaGCGuGCUCg -3'
miRNA:   3'- ugCUGCGGuUCCuGCaCCG--CGC-CGAG- -5'
6370 5' -60.4 NC_001847.1 + 56819 0.66 0.691726
Target:  5'- gGCG-CGCCuGGGGGCGcggggagGGgGCGGCcCa -3'
miRNA:   3'- -UGCuGCGG-UUCCUGCa------CCgCGCCGaG- -5'
6370 5' -60.4 NC_001847.1 + 22392 0.66 0.691726
Target:  5'- -aGGCGCCcGGGcCGcGGCgaGCGuGCUCg -3'
miRNA:   3'- ugCUGCGGuUCCuGCaCCG--CGC-CGAG- -5'
6370 5' -60.4 NC_001847.1 + 46954 0.66 0.690737
Target:  5'- gGCGAaGCCAAGGAgccggccccacuuUGggaGGCGCaGGCUg -3'
miRNA:   3'- -UGCUgCGGUUCCU-------------GCa--CCGCG-CCGAg -5'
6370 5' -60.4 NC_001847.1 + 67642 0.66 0.690737
Target:  5'- cGCGACcguGCCcucgucgAGGGGCGcggcGGCGCGGUg- -3'
miRNA:   3'- -UGCUG---CGG-------UUCCUGCa---CCGCGCCGag -5'
6370 5' -60.4 NC_001847.1 + 35913 0.66 0.690737
Target:  5'- gACGGCGCguGGGAgccuuUGUGGCggcgcgccgccgcGCGGC-Cg -3'
miRNA:   3'- -UGCUGCGguUCCU-----GCACCG-------------CGCCGaG- -5'
6370 5' -60.4 NC_001847.1 + 53076 0.66 0.685782
Target:  5'- -aGACGCCGAGcccggcucagcguucGGCGgGGCGgCGGCcCg -3'
miRNA:   3'- ugCUGCGGUUC---------------CUGCaCCGC-GCCGaG- -5'
6370 5' -60.4 NC_001847.1 + 119239 0.66 0.685782
Target:  5'- gACGACGagcuGGGAC-UGauuauggcggcgcccGCGCGGCUCg -3'
miRNA:   3'- -UGCUGCggu-UCCUGcAC---------------CGCGCCGAG- -5'
6370 5' -60.4 NC_001847.1 + 81244 0.66 0.681811
Target:  5'- gGCGGgGCCGucgcgAGGACGgggGGCccgcccgcccccGCGGCg- -3'
miRNA:   3'- -UGCUgCGGU-----UCCUGCa--CCG------------CGCCGag -5'
6370 5' -60.4 NC_001847.1 + 40161 0.66 0.681811
Target:  5'- aGCuGCGCCAaagccgcgGGGGC-UGcGCGCGGCg- -3'
miRNA:   3'- -UGcUGCGGU--------UCCUGcAC-CGCGCCGag -5'
6370 5' -60.4 NC_001847.1 + 122087 0.66 0.681811
Target:  5'- gGCGACGCCGGcGACGaggagacgcaguUGGCGCugacGCUg -3'
miRNA:   3'- -UGCUGCGGUUcCUGC------------ACCGCGc---CGAg -5'
6370 5' -60.4 NC_001847.1 + 66999 0.66 0.681811
Target:  5'- cGCGGCGCCGgagaaGGGGCaGacGCGC-GCUCg -3'
miRNA:   3'- -UGCUGCGGU-----UCCUG-CacCGCGcCGAG- -5'
6370 5' -60.4 NC_001847.1 + 32216 0.66 0.681811
Target:  5'- gGCGGgGCCGGGGcGCGgGGCGCcggacccaggGGCg- -3'
miRNA:   3'- -UGCUgCGGUUCC-UGCaCCGCG----------CCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.