miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6371 3' -59.1 NC_001847.1 + 104942 0.67 0.714226
Target:  5'- cAGCGCCUcggGGUCGAaggCgaGCGCCGGg -3'
miRNA:   3'- cUCGCGGA---CUAGCUggaGa-CGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 49474 0.67 0.714226
Target:  5'- cGAGCGCCUGcgCG-CCagcacggCcGCGCCa- -3'
miRNA:   3'- -CUCGCGGACuaGCuGGa------GaCGCGGcu -5'
6371 3' -59.1 NC_001847.1 + 86731 0.67 0.714226
Target:  5'- cGAGCGCCgg--CGACgcgucccgCUUUGCcGCCGAg -3'
miRNA:   3'- -CUCGCGGacuaGCUG--------GAGACG-CGGCU- -5'
6371 3' -59.1 NC_001847.1 + 2129 0.67 0.714226
Target:  5'- cAGCGCCUcggGGUCGAaggCgaGCGCCGGg -3'
miRNA:   3'- cUCGCGGA---CUAGCUggaGa-CGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 111359 0.67 0.70433
Target:  5'- -cGCG-CUGggCGACCUC-GCGCCc- -3'
miRNA:   3'- cuCGCgGACuaGCUGGAGaCGCGGcu -5'
6371 3' -59.1 NC_001847.1 + 92048 0.67 0.70433
Target:  5'- cGGCGCCUccGggCG-CCUCcGCcGCCGAg -3'
miRNA:   3'- cUCGCGGA--CuaGCuGGAGaCG-CGGCU- -5'
6371 3' -59.1 NC_001847.1 + 45363 0.67 0.70433
Target:  5'- cAGCGCgaUGA-CGGCCUCguaCGCCGGc -3'
miRNA:   3'- cUCGCGg-ACUaGCUGGAGac-GCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 27705 0.67 0.70433
Target:  5'- cGAGCGCCggcg-GGCCgcccGCGCCGAg -3'
miRNA:   3'- -CUCGCGGacuagCUGGaga-CGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 24590 0.67 0.70433
Target:  5'- -uGCGCCccguuaaucGAUCGACC-CU-CGCCGAu -3'
miRNA:   3'- cuCGCGGa--------CUAGCUGGaGAcGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 19010 0.67 0.70433
Target:  5'- cGGCGCCc--UCGGCCUCUucGCGCgUGAc -3'
miRNA:   3'- cUCGCGGacuAGCUGGAGA--CGCG-GCU- -5'
6371 3' -59.1 NC_001847.1 + 68909 0.67 0.691378
Target:  5'- cGAGCGCCgccgcgcUGAgguucggcgcggCGGCCgcgggCUGCGCCu- -3'
miRNA:   3'- -CUCGCGG-------ACUa-----------GCUGGa----GACGCGGcu -5'
6371 3' -59.1 NC_001847.1 + 949 0.67 0.674319
Target:  5'- -cGCGCCcGGg-GACgaCUGCGCCGGc -3'
miRNA:   3'- cuCGCGGaCUagCUGgaGACGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 1094 0.67 0.664236
Target:  5'- cGGGCGCCg---CGGCCgcgggCgGCGCCGc -3'
miRNA:   3'- -CUCGCGGacuaGCUGGa----GaCGCGGCu -5'
6371 3' -59.1 NC_001847.1 + 62437 0.67 0.694375
Target:  5'- uGAGCGUgUuuucGUCGGCgcggCUCUGCGCCGc -3'
miRNA:   3'- -CUCGCGgAc---UAGCUG----GAGACGCGGCu -5'
6371 3' -59.1 NC_001847.1 + 119864 0.67 0.714226
Target:  5'- cAGCGUCggGAUCGGCauugcggCUGCGgCGAu -3'
miRNA:   3'- cUCGCGGa-CUAGCUGga-----GACGCgGCU- -5'
6371 3' -59.1 NC_001847.1 + 60027 0.67 0.70433
Target:  5'- aGAGCGUgccGUCGGCCUCUuCGUCGGg -3'
miRNA:   3'- -CUCGCGgacUAGCUGGAGAcGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 34548 0.67 0.714226
Target:  5'- cGGGCGCUUGGggccacaGGCCgccaagCUGCacGCCGAc -3'
miRNA:   3'- -CUCGCGGACUag-----CUGGa-----GACG--CGGCU- -5'
6371 3' -59.1 NC_001847.1 + 127403 0.67 0.70433
Target:  5'- -uGCGCCccguuaaucGAUCGACC-CU-CGCCGAu -3'
miRNA:   3'- cuCGCGGa--------CUAGCUGGaGAcGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 130518 0.67 0.70433
Target:  5'- cGAGCGCCggcg-GGCCgcccGCGCCGAg -3'
miRNA:   3'- -CUCGCGGacuagCUGGaga-CGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 59223 0.68 0.633867
Target:  5'- -uGCGCUUGcacgcGUCGGCCgUCggcgaugGCGCCGGc -3'
miRNA:   3'- cuCGCGGAC-----UAGCUGG-AGa------CGCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.