miRNA display CGI


Results 81 - 100 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6371 3' -59.1 NC_001847.1 + 58365 0.69 0.57329
Target:  5'- aGGCGCggGAcgUCGGCCUCguagcggGUGCCGGc -3'
miRNA:   3'- cUCGCGgaCU--AGCUGGAGa------CGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 131935 0.69 0.57329
Target:  5'- cGAGCGgCUGcgCGAgCUggcggaccgCUGCGCCGu -3'
miRNA:   3'- -CUCGCgGACuaGCUgGA---------GACGCGGCu -5'
6371 3' -59.1 NC_001847.1 + 121809 0.69 0.563298
Target:  5'- cGGGCGCCUGcUCG-CCgcccGUGCCGGa -3'
miRNA:   3'- -CUCGCGGACuAGCuGGaga-CGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 111262 0.69 0.563298
Target:  5'- cGGCGCCgGGUCGGaggCgGCGCCGGg -3'
miRNA:   3'- cUCGCGGaCUAGCUggaGaCGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 70375 0.69 0.553353
Target:  5'- gGGGCGCCgggGcgCGAgCUC-GCGCUGGc -3'
miRNA:   3'- -CUCGCGGa--CuaGCUgGAGaCGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 88599 0.7 0.533627
Target:  5'- -cGCGgCUGGagGACCUCgcgcGCGCCGc -3'
miRNA:   3'- cuCGCgGACUagCUGGAGa---CGCGGCu -5'
6371 3' -59.1 NC_001847.1 + 11677 0.7 0.48552
Target:  5'- gGGGCGCUgcAUCGGCCUCaucaGCGCCu- -3'
miRNA:   3'- -CUCGCGGacUAGCUGGAGa---CGCGGcu -5'
6371 3' -59.1 NC_001847.1 + 30625 0.7 0.494984
Target:  5'- cGGCGgCUGAUCGugCUC-GaCGCCGu -3'
miRNA:   3'- cUCGCgGACUAGCugGAGaC-GCGGCu -5'
6371 3' -59.1 NC_001847.1 + 133184 0.7 0.504532
Target:  5'- cGGGCGCgggcugcccucgCUGGagGAgCUCUGCGCCGc -3'
miRNA:   3'- -CUCGCG------------GACUagCUgGAGACGCGGCu -5'
6371 3' -59.1 NC_001847.1 + 82508 0.7 0.523858
Target:  5'- -cGCGUCUGGcgCGGCgCUCgcgcacGCGCCGAa -3'
miRNA:   3'- cuCGCGGACUa-GCUG-GAGa-----CGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 122106 0.7 0.533627
Target:  5'- cAGCGCCucagUGggCGGCaugCUGCGCCGu -3'
miRNA:   3'- cUCGCGG----ACuaGCUGga-GACGCGGCu -5'
6371 3' -59.1 NC_001847.1 + 34633 0.7 0.494984
Target:  5'- cGGCGCCUGcgCGccgagGCCgagCggcGCGCCGAg -3'
miRNA:   3'- cUCGCGGACuaGC-----UGGa--Ga--CGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 42679 0.7 0.48552
Target:  5'- -cGCGCUggccAUCGACCggccCUGCGCCGu -3'
miRNA:   3'- cuCGCGGac--UAGCUGGa---GACGCGGCu -5'
6371 3' -59.1 NC_001847.1 + 133438 0.7 0.494984
Target:  5'- cGGCGgCUGAUCGugCUC-GaCGCCGu -3'
miRNA:   3'- cUCGCgGACUAGCugGAGaC-GCGGCu -5'
6371 3' -59.1 NC_001847.1 + 32726 0.71 0.44857
Target:  5'- gGAGCGCCUc-UCGGCCUCcG-GCCGGc -3'
miRNA:   3'- -CUCGCGGAcuAGCUGGAGaCgCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 66349 0.71 0.430687
Target:  5'- cGGGCGCCgccguggcGAUCGuCCcCgugGCGCCGAa -3'
miRNA:   3'- -CUCGCGGa-------CUAGCuGGaGa--CGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 81086 0.71 0.430687
Target:  5'- cGGCGCUggcggCGGCCUCgccgcGCGCCGAc -3'
miRNA:   3'- cUCGCGGacua-GCUGGAGa----CGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 105621 0.72 0.404665
Target:  5'- -cGCGCCgcgcGggCGAgCUCUGCGgCCGAa -3'
miRNA:   3'- cuCGCGGa---CuaGCUgGAGACGC-GGCU- -5'
6371 3' -59.1 NC_001847.1 + 2577 0.72 0.404665
Target:  5'- cGGGCGCCUGcgCGGCCgCcGCgGCCGc -3'
miRNA:   3'- -CUCGCGGACuaGCUGGaGaCG-CGGCu -5'
6371 3' -59.1 NC_001847.1 + 44083 0.72 0.396213
Target:  5'- -cGUGCCUGcugCGGCgUCUGCGCCc- -3'
miRNA:   3'- cuCGCGGACua-GCUGgAGACGCGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.