Results 21 - 40 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6371 | 3' | -59.1 | NC_001847.1 | + | 34633 | 0.7 | 0.494984 |
Target: 5'- cGGCGCCUGcgCGccgagGCCgagCggcGCGCCGAg -3' miRNA: 3'- cUCGCGGACuaGC-----UGGa--Ga--CGCGGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 42679 | 0.7 | 0.48552 |
Target: 5'- -cGCGCUggccAUCGACCggccCUGCGCCGu -3' miRNA: 3'- cuCGCGGac--UAGCUGGa---GACGCGGCu -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 88599 | 0.7 | 0.533627 |
Target: 5'- -cGCGgCUGGagGACCUCgcgcGCGCCGc -3' miRNA: 3'- cuCGCgGACUagCUGGAGa---CGCGGCu -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 122106 | 0.7 | 0.533627 |
Target: 5'- cAGCGCCucagUGggCGGCaugCUGCGCCGu -3' miRNA: 3'- cUCGCGG----ACuaGCUGga-GACGCGGCu -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 82508 | 0.7 | 0.523858 |
Target: 5'- -cGCGUCUGGcgCGGCgCUCgcgcacGCGCCGAa -3' miRNA: 3'- cuCGCGGACUa-GCUG-GAGa-----CGCGGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 133184 | 0.7 | 0.504532 |
Target: 5'- cGGGCGCgggcugcccucgCUGGagGAgCUCUGCGCCGc -3' miRNA: 3'- -CUCGCG------------GACUagCUgGAGACGCGGCu -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 30625 | 0.7 | 0.494984 |
Target: 5'- cGGCGgCUGAUCGugCUC-GaCGCCGu -3' miRNA: 3'- cUCGCgGACUAGCugGAGaC-GCGGCu -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 11677 | 0.7 | 0.48552 |
Target: 5'- gGGGCGCUgcAUCGGCCUCaucaGCGCCu- -3' miRNA: 3'- -CUCGCGGacUAGCUGGAGa---CGCGGcu -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 58365 | 0.69 | 0.57329 |
Target: 5'- aGGCGCggGAcgUCGGCCUCguagcggGUGCCGGc -3' miRNA: 3'- cUCGCGgaCU--AGCUGGAGa------CGCGGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 45215 | 0.69 | 0.57329 |
Target: 5'- cGAGCGCCgccgcGAgcgCGGCCUC-GCGCgGc -3' miRNA: 3'- -CUCGCGGa----CUa--GCUGGAGaCGCGgCu -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 29122 | 0.69 | 0.57329 |
Target: 5'- cGAGCGgCUGcgCGAgCUggcggaccgCUGCGCCGu -3' miRNA: 3'- -CUCGCgGACuaGCUgGA---------GACGCGGCu -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 8449 | 0.69 | 0.563298 |
Target: 5'- cGGCGCCgGGUCGGaggCgGCGCCGGg -3' miRNA: 3'- cUCGCGGaCUAGCUggaGaCGCGGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 42082 | 0.69 | 0.563298 |
Target: 5'- cGGCGC---AUCGGCCUCgcgGUGCCGGc -3' miRNA: 3'- cUCGCGgacUAGCUGGAGa--CGCGGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 4518 | 0.69 | 0.583323 |
Target: 5'- -cGCGUCU--UCGGCCUCgGCGCCc- -3' miRNA: 3'- cuCGCGGAcuAGCUGGAGaCGCGGcu -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 11584 | 0.69 | 0.583323 |
Target: 5'- cGGUGCC-GGUUG-CUUCUGCGCUGGc -3' miRNA: 3'- cUCGCGGaCUAGCuGGAGACGCGGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 70375 | 0.69 | 0.553353 |
Target: 5'- gGGGCGCCgggGcgCGAgCUC-GCGCUGGc -3' miRNA: 3'- -CUCGCGGa--CuaGCUgGAGaCGCGGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 127310 | 0.69 | 0.543461 |
Target: 5'- cGGUGCCgGAgacacggCGACCg--GCGCCGAg -3' miRNA: 3'- cUCGCGGaCUa------GCUGGagaCGCGGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 131935 | 0.69 | 0.57329 |
Target: 5'- cGAGCGgCUGcgCGAgCUggcggaccgCUGCGCCGu -3' miRNA: 3'- -CUCGCgGACuaGCUgGA---------GACGCGGCu -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 121809 | 0.69 | 0.563298 |
Target: 5'- cGGGCGCCUGcUCG-CCgcccGUGCCGGa -3' miRNA: 3'- -CUCGCGGACuAGCuGGaga-CGCGGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 111262 | 0.69 | 0.563298 |
Target: 5'- cGGCGCCgGGUCGGaggCgGCGCCGGg -3' miRNA: 3'- cUCGCGGaCUAGCUggaGaCGCGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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