miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6371 3' -59.1 NC_001847.1 + 11584 0.69 0.583323
Target:  5'- cGGUGCC-GGUUG-CUUCUGCGCUGGc -3'
miRNA:   3'- cUCGCGGaCUAGCuGGAGACGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 131935 0.69 0.57329
Target:  5'- cGAGCGgCUGcgCGAgCUggcggaccgCUGCGCCGu -3'
miRNA:   3'- -CUCGCgGACuaGCUgGA---------GACGCGGCu -5'
6371 3' -59.1 NC_001847.1 + 89843 0.68 0.654128
Target:  5'- -cGCGCCUG--CGACCgccggCUGCaagGCCGGc -3'
miRNA:   3'- cuCGCGGACuaGCUGGa----GACG---CGGCU- -5'
6371 3' -59.1 NC_001847.1 + 82546 0.68 0.623731
Target:  5'- aGGCGCCgcccgcgGGcUCGGCCUCgGcCGCCGc -3'
miRNA:   3'- cUCGCGGa------CU-AGCUGGAGaC-GCGGCu -5'
6371 3' -59.1 NC_001847.1 + 59872 0.68 0.654128
Target:  5'- cGAGgGCCggcGcgCGGCCUCcGCGuuGGc -3'
miRNA:   3'- -CUCgCGGa--CuaGCUGGAGaCGCggCU- -5'
6371 3' -59.1 NC_001847.1 + 88301 0.68 0.654128
Target:  5'- -uGCGCCgcgggggcGGUCGACUUUUGCGCg-- -3'
miRNA:   3'- cuCGCGGa-------CUAGCUGGAGACGCGgcu -5'
6371 3' -59.1 NC_001847.1 + 78752 0.68 0.613602
Target:  5'- -cGCGCC-GGcCGACCUCcccgacccgaGCGCCGAg -3'
miRNA:   3'- cuCGCGGaCUaGCUGGAGa---------CGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 59223 0.68 0.633867
Target:  5'- -uGCGCUUGcacgcGUCGGCCgUCggcgaugGCGCCGGc -3'
miRNA:   3'- cuCGCGGAC-----UAGCUGG-AGa------CGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 126677 0.68 0.633867
Target:  5'- cGAGCGCCgccccCGGCC-CgGCGCCGc -3'
miRNA:   3'- -CUCGCGGacua-GCUGGaGaCGCGGCu -5'
6371 3' -59.1 NC_001847.1 + 107649 0.68 0.613602
Target:  5'- cGGCgGCCga---GGCCUCUGCcGCCGAa -3'
miRNA:   3'- cUCG-CGGacuagCUGGAGACG-CGGCU- -5'
6371 3' -59.1 NC_001847.1 + 13150 0.68 0.623731
Target:  5'- -cGCGUUg---CGACCcagCUGCGCCGAg -3'
miRNA:   3'- cuCGCGGacuaGCUGGa--GACGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 32912 0.68 0.633867
Target:  5'- cGAGCGCCUGGaCG-CCguccCGCCGAc -3'
miRNA:   3'- -CUCGCGGACUaGCuGGagacGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 23864 0.68 0.633867
Target:  5'- cGAGCGCCgccccCGGCC-CgGCGCCGc -3'
miRNA:   3'- -CUCGCGGacua-GCUGGaGaCGCGGCu -5'
6371 3' -59.1 NC_001847.1 + 74353 0.68 0.644002
Target:  5'- cGGGCGCCaccaaGGUgGGCUgCUGCGCCu- -3'
miRNA:   3'- -CUCGCGGa----CUAgCUGGaGACGCGGcu -5'
6371 3' -59.1 NC_001847.1 + 68909 0.67 0.691378
Target:  5'- cGAGCGCCgccgcgcUGAgguucggcgcggCGGCCgcgggCUGCGCCu- -3'
miRNA:   3'- -CUCGCGG-------ACUa-----------GCUGGa----GACGCGGcu -5'
6371 3' -59.1 NC_001847.1 + 949 0.67 0.674319
Target:  5'- -cGCGCCcGGg-GACgaCUGCGCCGGc -3'
miRNA:   3'- cuCGCGGaCUagCUGgaGACGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 1094 0.67 0.664236
Target:  5'- cGGGCGCCg---CGGCCgcgggCgGCGCCGc -3'
miRNA:   3'- -CUCGCGGacuaGCUGGa----GaCGCGGCu -5'
6371 3' -59.1 NC_001847.1 + 19010 0.67 0.70433
Target:  5'- cGGCGCCc--UCGGCCUCUucGCGCgUGAc -3'
miRNA:   3'- cUCGCGGacuAGCUGGAGA--CGCG-GCU- -5'
6371 3' -59.1 NC_001847.1 + 24590 0.67 0.70433
Target:  5'- -uGCGCCccguuaaucGAUCGACC-CU-CGCCGAu -3'
miRNA:   3'- cuCGCGGa--------CUAGCUGGaGAcGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 62437 0.67 0.694375
Target:  5'- uGAGCGUgUuuucGUCGGCgcggCUCUGCGCCGc -3'
miRNA:   3'- -CUCGCGgAc---UAGCUG----GAGACGCGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.